Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1105 ATGGGCAACCTAGTCCGGAGGAGGAGCACTACAATGTCCCCGGTTCCTTCCATGATGCTGTTTTCATTCATTTCTTTCCTTGCCATTCTCAAATCTGAAGCCCAGGATCAGCTAAATTTCGTGTACCATGAATGTAACAACCACTTCGGAAACTTCACCCCTGCAGGTGTCTACGGCAGCAACCTGAATACCCTCTTGTCCAAAGTGTATTCCCACGAAGAAATCGACAACGGCTACTACAATTTCTCGTATGGCCAAAACCCTAACAAAGCTTACGCCATCGGTTTCTGCAGAGGAGATGTTAAGCCAGATAAGTGCCGTCGCTGCCTGGATAAGTCCGCGGTCCTTCTCAGAGAGCGGTGCCCATTACAGAAAGAGGCCATTGCATGGTTTGACGCGTGCATGCTACGCTACACAAACCACTCAATATTTGGCGTCATGGTAACTCAACCTAACAACATCTTGTGCAACACAAATAACGTGTCGACGAAGGTGCTGGAACAGTTTGATCAAGCTGTGGACGACTTGTTGAGCAAGTTGAGTAACATGACGGTGGACGGCGGTGGCTCCCGCCGCAATAGCGAGTTCTTTGCGGAAGGAGATGCTCCAGTTCAATCAAGCAACACCACCATATATGCTCTACTTCAGTGCACACCTGATATTTCGAAACAAAACTGTACTGAATGCTTGCAGAGTGCTTTGTCAGAAATTTCGACATTTTGTGATGGAAAGATGGGTGGTCAATATCTAGGGCCAAGCTGTTCTGTTAGATATGAGACCTACCTCTTCTTTGAGCCCATAGTCGATGCACCAGCTCCAGCACCACAGCCTGCCACTGATCAGGTTACCACGCCCATTGGAGAAGAAAAGAGGAACCCATCACGAACCATCATTGCGATAGTCGTGCCAATGGTTGTCGTTATCGTACTCCTGGCCATTATGTACAATTATTTAGGAGCGAGAAGACGAAGACGCAACAAACCTATCCAAAATGAAGGTGAAGGTGATGATGATGAAGGGGAACTTGCTAATGACATTAAAACAGATGATCAGTTGTTGCAATTTGACTTTGCAACCATCAAATTTGCAACAAATGACTTCTCTGACGCAAATAAGCTTGGCCAAGGTGGATTTGGAATTGTTTATAAGGGTACGCTTTCTGATGGACAAGAAATTGCAATTAAAAGATTGTCTATCAATTCTAACCAAGGAGAAACAGAATTTAAGAATGAAATTTTGCTAACAGGGAGGCTTCAGCACCGAAACTTAGTTAGACTACTTGGATTTTGTTTTGCAAGAAGAGAAAGGTTATTGATATATGAGTTCGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAAACAAACGTGTAAATTTGAATTGGGAGATACGCTACAAAATCATAAGAGGCATTGCTCGAGGTCTTCTTTATCTTCATGAAGATTCACGATTAAACGTTGTTCATCGTGATCTGAAAACAAGTAACATTTTGTTAGATGGAGAATTGAATCCTAAAATATCAGATTTTGGCATGGCAAGATTATTTGAGATCAATCAAACTGAAGCCAGTACAACTACAATTGTTGGGACCTTTGGATATATGGCTCCTGAATACATTAAACATGGACAGTTTTCTATCAAGTCAGATGTCTTTAGTTTTGGCGTTATGATTCTGGAAATAGTATGCGGCCAAAGAAACAGTCAGATTCGTGATAGCGAAGAAAACGCACAGGATTTATTAAGCTTTGCATGGAACAATTGGAGGGGAGGGACAGTTTCAAATATTGTAGATCCCACATTAAAGGATTATTCTTGGGATGAAATAAGGAGATGTATTCACATTGGATTACTGTGTGTACAGGAAGATATAGCTGATAGACCAACTATGAATACCGTTTTATTAATGCTTCATAGCAGCTCTTTCCCACTTGCTGAACCTTCTGAACCTGCGTTTTTAATGCGCCGTAAAAGTTCTTTGCCTATGATTATGTTGTCTGGCAGTGAGCAATATTCAGAGGTAACAAGATCAAGTGATTCAGGAAGTCAATATGCTCAAGGATCATCAATAGTTAAGACTCCAACCACTGAGCCATATCCTCGTTAG 2109 0.4187 MGNLVRRRSTTMSPVPSMMLFSFISFLAILKSEAQDQLNFVYHECNNHFGNFTPAGVYGSNLNTLLSKVYSHEEIDNGYYNFSYGQNPNKAYAIGFCRGDVKPDKCRRCLDKSAVLLRERCPLQKEAIAWFDACMLRYTNHSIFGVMVTQPNNILCNTNNVSTKVLEQFDQAVDDLLSKLSNMTVDGGGSRRNSEFFAEGDAPVQSSNTTIYALLQCTPDISKQNCTECLQSALSEISTFCDGKMGGQYLGPSCSVRYETYLFFEPIVDAPAPAPQPATDQVTTPIGEEKRNPSRTIIAIVVPMVVVIVLLAIMYNYLGARRRRRNKPIQNEGEGDDDEGELANDIKTDDQLLQFDFATIKFATNDFSDANKLGQGGFGIVYKGTLSDGQEIAIKRLSINSNQGETEFKNEILLTGRLQHRNLVRLLGFCFARRERLLIYEFVPNKSLDYFIFDPNKRVNLNWEIRYKIIRGIARGLLYLHEDSRLNVVHRDLKTSNILLDGELNPKISDFGMARLFEINQTEASTTTIVGTFGYMAPEYIKHGQFSIKSDVFSFGVMILEIVCGQRNSQIRDSEENAQDLLSFAWNNWRGGTVSNIVDPTLKDYSWDEIRRCIHIGLLCVQEDIADRPTMNTVLLMLHSSSFPLAEPSEPAFLMRRKSSLPMIMLSGSEQYSEVTRSSDSGSQYAQGSSIVKTPTTEPYPR* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1105 702 Gene3D Phosphorylase Kinase; domain 1 334 442 - -
Gso20g1105 702 MobiDBLite consensus disorder prediction 672 702 - -
Gso20g1105 702 Gene3D Transferase(Phosphotransferase) domain 1 443 645 - -
Gso20g1105 702 Gene3D - 37 142 IPR038408 -
Gso20g1105 702 Gene3D - 150 263 IPR038408 -
Gso20g1105 702 ProSiteProfiles Gnk2-homologous domain profile. 40 143 IPR002902 -
Gso20g1105 702 MobiDBLite consensus disorder prediction 672 696 - -
Gso20g1105 702 ProSiteProfiles Gnk2-homologous domain profile. 149 263 IPR002902 -
Gso20g1105 702 Pfam Protein kinase domain 368 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1105 702 CDD STKc_IRAK 373 638 - -
Gso20g1105 702 ProSiteProfiles Protein kinase domain profile. 367 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1105 702 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Gso20g1105 702 Pfam Salt stress response/antifungal 156 261 IPR002902 -
Gso20g1105 702 Pfam Salt stress response/antifungal 45 140 IPR002902 -
Gso20g1105 702 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 19 702 - -
Gso20g1105 702 SUPERFAMILY Protein kinase-like (PK-like) 351 678 IPR011009 -
Gso20g1105 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Gso20g1105 702 SMART serkin_6 367 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1105 702 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1105 Gso-Chr20 40853667 40857960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1105 19 655 Receptor kinase-like Gene Family AT4G21410 45.649 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1105 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1105 - - gmx:100787936 1388.24