Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1104 ATGATCGTACCTATAGCTTCCAATATTCTGATAATCGAGAGGACGATCAGGATGCCTGGTGTTTCTTCCATGCTTCTTTTCTTTCTATTTGTAATATTAATATCTCAAGTCAGTGCCTTAAGCGTAACCTGTGATTACAGCGAGGTCGGAAATTACACAGCAAATAGCACCTATAACACCAATCTGAACACCCTTTTATCCACTCTCTCTTCCAACACAGAAATTAATTACGGTTTCTACAACTTCTCACATGGTCAAAGCCCAGACAGAGTCAACGTCATTGGACTCTGCAGGGGAGATCTGGCGCCAGATGAGTGCCGCAGTTGCCTCAACTATGCCAGAAGCAATCTCACGCAGGATTGTCCAAACCAGAAAGAGGCAATTATACAACATAGAAAATGCATGTTGCGCTACTCGAACCGCACAATATTTGGCAATCCGGAAGTTCAACCTTGTACTTGTTTGCGGAACTTATCCAATGTAATGTACGGGGATGAGTTCAAGCAAGTGCTTGCGAACTTAATGAGGAACCTCAAAGGTGTAGCTGCATCGGGTGACTCTCGTCGTAAGTATGCTACGGATAATGTAACTACTGGAAATTTTGAAACCATATATGGTCTTGTGCAGTGCACCCCTGATTTGTCTGAGATACAATGCAATGACTGCTTGGATTGGACTATCTCACAAATCCCATATTGTTGTAATATAACGAACTGTGGTGGAGCTGTTGGACCCAGTTGTAATATTAGATTTCAAAACTACCGCTTCTACAACCAGACGATTATGTTGGACCCAGAGATACCACCATCATGGCCAGCATCACCTCCTTTCGCCGACATTTCCCCAGAAACAGAAGAAAGTGGCAACACAATAGTTATTGTCATCTCCATAGTTGTGCCAACTGTTGTTGTCGTTTTGCTCATTTGTCTCTGCCTCTATTTAAGGAGGAGGAAGGCTAGGAAAAATCTTGTAGTTAAAGAAGATGAAGTTGAGGATGAAATTAAAATTGCCGAGTCATTGCAATTTAACTTCAACACAATACAAGTTGCTTCAGAAGACTTCTCTGATTCTAATAAACTTGGACAAGGTGGATTTGGAGCTGTTTACAGGGGTAGGCTCTCTAATGGGCAGATGATTGCAGTTAAAAGGTTGTCAAGAGATTCTGGCCAAGGAGATACAGAATTTAAGAATGAGGTGCTTTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTTGGTTTCTGCTTGGAAGGAAATGAAAGGCTACTTGTCTATGAATATGTTCCTAATAAAAGCCTTGATTATTTCATATTTGATCCAAACATGAAAGCACAATTGGATTGGAAAAGTCGCTACAAAATCATTAGAGGTATAGCTCGAGGCCTTCTATACCTCCATGAAGATTCTCGACTGCGTATTATACATCGTGATCTCAAAGCAAGCAACATTCTCTTAGACGAAGAGATGAGTCCGAAAATAGCAGATTTTGGCATGGCAAGACTGGTTTTAGTGGATCAAACTCAAGCAAATACAAGTAGAATTGTTGGAACCTATGGATATATGGCACCAGAATATGCAATGCATGGACAATTTTCAGTGAAATCAGATGTCTTCAGTTTTGGTGTACTAGTTCTTGAGATTTTAAGCGGCCAAAATAACAGTGGCATTCATCATGGGGAGAATGTTGAGGATCTACTAAGTTTCGCATGGAGAAGTTGGAAGGAGGGGACAGCTATAAATATTGTAGATCCATCATTAAACAACAATTCACGAAATGAAATGATGAGATGCATCCATATTGGTTTACTTTGTGTTCAAGAAAATTTAGCGGACAGACCAACCATGGCTACCATTATGCTCATGCTAAATAGCTATTCTCTAAGTCTCCCCATTCCCGCCAAACCTGCATTTTATATGAACAGTAGAACTGAAAGTCTTCCAGACATGCAGTCATGGGAATACAACTGA 1974 0.4073 MIVPIASNILIIERTIRMPGVSSMLLFFLFVILISQVSALSVTCDYSEVGNYTANSTYNTNLNTLLSTLSSNTEINYGFYNFSHGQSPDRVNVIGLCRGDLAPDECRSCLNYARSNLTQDCPNQKEAIIQHRKCMLRYSNRTIFGNPEVQPCTCLRNLSNVMYGDEFKQVLANLMRNLKGVAASGDSRRKYATDNVTTGNFETIYGLVQCTPDLSEIQCNDCLDWTISQIPYCCNITNCGGAVGPSCNIRFQNYRFYNQTIMLDPEIPPSWPASPPFADISPETEESGNTIVIVISIVVPTVVVVLLICLCLYLRRRKARKNLVVKEDEVEDEIKIAESLQFNFNTIQVASEDFSDSNKLGQGGFGAVYRGRLSNGQMIAVKRLSRDSGQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGNERLLVYEYVPNKSLDYFIFDPNMKAQLDWKSRYKIIRGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMSPKIADFGMARLVLVDQTQANTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEILSGQNNSGIHHGENVEDLLSFAWRSWKEGTAINIVDPSLNNNSRNEMMRCIHIGLLCVQENLADRPTMATIMLMLNSYSLSLPIPAKPAFYMNSRTESLPDMQSWEYN* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1104 657 SMART serkin_6 354 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1104 657 CDD STKc_IRAK 360 625 - -
Gso20g1104 657 Pfam Protein tyrosine and serine/threonine kinase 357 622 IPR001245 GO:0004672|GO:0006468
Gso20g1104 657 Gene3D Phosphorylase Kinase; domain 1 316 429 - -
Gso20g1104 657 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Gso20g1104 657 Gene3D - 39 142 IPR038408 -
Gso20g1104 657 Gene3D - 151 256 IPR038408 -
Gso20g1104 657 Gene3D Transferase(Phosphotransferase) domain 1 430 631 - -
Gso20g1104 657 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 650 - -
Gso20g1104 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Gso20g1104 657 Pfam Salt stress response/antifungal 160 254 IPR002902 -
Gso20g1104 657 Pfam Salt stress response/antifungal 44 140 IPR002902 -
Gso20g1104 657 SUPERFAMILY Protein kinase-like (PK-like) 340 651 IPR011009 -
Gso20g1104 657 ProSiteProfiles Protein kinase domain profile. 354 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1104 657 ProSiteProfiles Gnk2-homologous domain profile. 149 256 IPR002902 -
Gso20g1104 657 ProSiteProfiles Gnk2-homologous domain profile. 40 143 IPR002902 -
Gso20g1104 657 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 19 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1104 Gso-Chr20 40848533 40852264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1104 18 643 Receptor kinase-like Gene Family AT4G21410 52.923 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1104 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1104 - - gmx:100782800 1092.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1104 20 40848533 40852264 Gso10g2263 10 49692901 49696346 GST
Gso1g2056 1 56938412 56942517 Gso20g1104 20 40848533 40852264 PCT