LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g1103	ATGGCTGCAGTTTCTTTTAGACTCCTTTCCTTTCTTTGTTGTCTCTCCATTATAATCATATCACAGGCCAGCGCCCAGACAAACTGTGATAACGACAAAGGCAACTACACAATCAATAGCACCTACCACAGCAATCTCAACACTCTCTTATCCAATTTCTCTTCCCACACAGATATCTACTATGGTTTCTACAATTTCTCGTATGGCCAAGACCCAGACAAAGTATACGCCATTGGGCTCTGCAGAGGCGATCAAAACCCGGATCAGTGCCTCAAATGCCTCAATGAGTCCAGAGTCTCTCTGGCAGATGAATGTCCAAACCAGAAAGAGGCAATTAATTGGAGAGGAGAGTGCATGCTACGCTACTCTAACCGCTCCATATTTGGCCGAATGGAAAATCAACCTACGTCTCGAATCGTTTACCTGAAGAATGTAACGGGCTCAGTGGATGAATTCAATGATGTGCTGGAGAGCTTGATGAGGAATTTATCAAGCACGGCAGCATCAGGTGACTCTCGTCGTAAGTATGCTACAGGCAGCAAACCTGCTCCAGATTTTCAAACCACATACGGTTATACACAGTGCACGCCTGATTTGTCATCCGAAGATTGCACTACGTGCTTGGGTGAAGCTATTTCAGATATCCCAAATTATTTTAATGGCAAGGCTGGTGGCAACGTTTTAAAACCCAGTTGTAGAATTAGATTCGACCCCTACTCCTACTATGGACCAACATTGAAATTAGACCCAGATGCATCACCAACTATGACCAACAACACTTCTTCTTCACAAGGGAAGGGCAACACATCACGAATTATCATTGCCATAGTAGTTCCAGTTGCTAGTGTTGTTTTGGTGCTCATTCTTTTCTGCATCTATCTTAGAGCGAGGAAGTCAAGAAAACAAAATGAAAGTGAAAAAAGAGAAGATAATAATGAAGATGAAATTACATTTGCTGAGTCATTGCAATTCGACTTTGACACTATACGAGTTGCTACAAATGAATTTGCTGATTGTAATAAAATTGGACAAGGCGGGTTTGGAGCTGTTTACAGAGGTCAGCTTTCCAACGGACAAGAGATTGCAGTAAAAAGGTTGTCAAGGGATTCTGGGCAAGGAGATATGGAATTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAACACAGAAATTTAGTTAGGCTACTTGGGTTCTGTCTGGAAGGAACAGAAAGACTTCTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCCAATAAAGAAAGCACAATTGGATTGGCAAAGGCGTTACAAAATCATTGGAGGTATTGCTCGAGGTCTTCTCTACCTCCATGAAGATTCTAGACTGCGTATTATACATCGTGACCTCAAAGCAAGCAACATTCTCTTGGATGAAGAGATGCATCCTAAGATATCTGATTTTGGGATGGCAAGATTGGTTCACATGGATCAGACTCAGGAAAATACAAGTAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATATATGGTCAATTTTCAGCAAAATCAGATGTTTTTAGTTTTGGTGTACTGGTTCTTGAGATAATAAGTGGCCATAAAAACAGTGGTGTTCGACGTGGGGAGAATGTGGAGGATCTATTGTGCTTTGCATGGCGAAACTGGAGGGATGGAACAACTACCAACATTGTAGATCCCACATTAACTGACGGTTTGCGAAATGAAATAATGAGATGTATCCACATTGGGTTATTATGTGTTCAAGAAAATGTGGCTGCCAGACCAACCATGGCTTCTGTTGCACTCATGCTTAATAGCTATTCTCTAACTCTACCGGTGCCTTCAGAACCAGCATTTGTTGGGGATGGTAGAACTAGAAGCCTTCCAGACATGCAATCCTCATCAGAGCATAATTCAAGGCAAACAATTGAATCAGCAAATCAATCAGCTCACAATTCGGTAAATGAGGCTTCAATTACTGAGCTATATCCTCGCTAA	2004	0.4137	MAAVSFRLLSFLCCLSIIIISQASAQTNCDNDKGNYTINSTYHSNLNTLLSNFSSHTDIYYGFYNFSYGQDPDKVYAIGLCRGDQNPDQCLKCLNESRVSLADECPNQKEAINWRGECMLRYSNRSIFGRMENQPTSRIVYLKNVTGSVDEFNDVLESLMRNLSSTAASGDSRRKYATGSKPAPDFQTTYGYTQCTPDLSSEDCTTCLGEAISDIPNYFNGKAGGNVLKPSCRIRFDPYSYYGPTLKLDPDASPTMTNNTSSSQGKGNTSRIIIAIVVPVASVVLVLILFCIYLRARKSRKQNESEKREDNNEDEITFAESLQFDFDTIRVATNEFADCNKIGQGGFGAVYRGQLSNGQEIAVKRLSRDSGQGDMEFKNEVLLVAKLQHRNLVRLLGFCLEGTERLLVYEFVPNKSLDYFIFDPIKKAQLDWQRRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMHPKISDFGMARLVHMDQTQENTSRIVGTYGYMAPEYAIYGQFSAKSDVFSFGVLVLEIISGHKNSGVRRGENVEDLLCFAWRNWRDGTTTNIVDPTLTDGLRNEIMRCIHIGLLCVQENVAARPTMASVALMLNSYSLTLPVPSEPAFVGDGRTRSLPDMQSSSEHNSRQTIESANQSAHNSVNEASITELYPR*	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso20g1103	667	SMART	serkin_6	336	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso20g1103	667	ProSiteProfiles	Gnk2-homologous domain profile.	24	127	IPR002902	-
	Gso20g1103	667	Gene3D	-	22	126	IPR038408	-
	Gso20g1103	667	Gene3D	-	137	241	IPR038408	-
	Gso20g1103	667	ProSiteProfiles	Gnk2-homologous domain profile.	133	241	IPR002902	-
	Gso20g1103	667	SUPERFAMILY	Protein kinase-like (PK-like)	322	639	IPR011009	-
	Gso20g1103	667	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	457	469	IPR008271	GO:0004672\|GO:0006468
	Gso20g1103	667	Pfam	Salt stress response/antifungal	149	237	IPR002902	-
	Gso20g1103	667	Pfam	Salt stress response/antifungal	29	124	IPR002902	-
	Gso20g1103	667	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	4	648	-	-
	Gso20g1103	667	MobiDBLite	consensus disorder prediction	629	661	-	-
	Gso20g1103	667	MobiDBLite	consensus disorder prediction	622	667	-	-
	Gso20g1103	667	Pfam	Protein tyrosine and serine/threonine kinase	340	537	IPR001245	GO:0004672\|GO:0006468
	Gso20g1103	667	Gene3D	Transferase(Phosphotransferase) domain 1	412	613	-	-
	Gso20g1103	667	CDD	STKc_IRAK	342	607	-	-
	Gso20g1103	667	ProSiteProfiles	Protein kinase domain profile.	336	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso20g1103	667	ProSitePatterns	Protein kinases ATP-binding region signature.	342	364	IPR017441	GO:0005524
	Gso20g1103	667	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	4	648	-	-
	Gso20g1103	667	Gene3D	Phosphorylase Kinase; domain 1	296	411	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g1103	Gso-Chr20	40841109	40844753	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso20g1103	7	667	Receptor kinase-like Gene Family	AT4G21410	48.551	0.0	629

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso20g1103		PK_Tyr_Ser-Thr	7.7e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g1103	-		-	gmx:100784223	1291.17