Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1102 ATGATCGTACCTATAGCTTCCAATATTCTGATAATCGAGAGGACGATCAGGATGCCTGGTGTTTCTTCCATGCTTCTTTTCTTTCTATTTGTAATATTAATATCTCAAGTCAGTGCCCAGTTAACCTGTGATTACAGCAAGGTCGGAAATTACACAGCAAGTAGCACCTATAACACCAATCTGAACACCCTTTTATCCACTCTCTCTTCCAACACAGAAATTAATTACGGTTTCTACCACTTCTCACATGGTCAAAGCCCAGACAGAGTCAACGCCATTGGGCTCTGCAGGGGAGATGTGGAGCCAGATGAGTGCCGCAGTTGCCTCAACTATGCCAGAAGCAATCTCACACAAGATTGTCCAAACCAGAAAGAGGCAATTATACAATATGACAATTGCATGTTGCGCTACTCCAACCGCACAATATTTGGCAATCTGGAATTTCAACCTGGTTATTGTGTGCGGAACTTATCCAATGTAATGGACGGGGATCAGTCCAAGCAAGCGCTTGCGAACTTAATGGGGAAACTCAAAGGTGTAGCTGCATCGGGTGACTCTCGTCGTAAGTATGCTACGGATAATGTAACTACTGGAAATTTTGAAACCATATATGGTCTTGTGCAGTGCACCCCTGATTTGTCTGAGACACAATGCAATGACTGCTTGGATGGGGCTATCTCAGACATCCTACCTTGTTGTAATTTAAGGTTCTGTGGTGGAGGTGTTAGACCCAGTTGTAATATTAGATTTGAAAACTACCGCTTCTACAAACAGACGACTGTATTGGACCCAGAAGAAAGTGGCAACACAATAGTAATTGCCATCTCCATAGTTGTGCCAACTGTTGTTGTCGTTTTCCTCATTTGTCTCTGCTTATATTTAAGGAGGAGGAAGGCTAGGAAAAATCTTGTAGTTAAAGAAAATGATGTTGAGGATGAAATTAAAATTGCCGAGTCATTGCAATTTAACTTCAACACAATACAAGTTGCTACAGAAGACTTCTCTGATTCTAATAAACTTGGACAAGGTGGATTTGGAGCTGTTTACAGGGGTAGGCTCTCTACTGGACAGATGATTGCAGTTAAAAGGTTGTCAAGAGATTCTGGTCAAGGAGATACAGAATTTAAGAATGAGGTGCTTTTAGTGGCCAAGCTTCAGCACCGCAATTTAGTTAGGCTACTTGGTTTCTGCTTGGAAGGAAATGAAAGGCTACTTGTCTATGAATATGTTCCTAATAAAAGCCTTGATTATTTCATATTTGATCCAAACATGAAAGCACAATTTGATTGGGAAAGTCGTTACAAAATCATTCGAGGTATAGCTCGAGGCCTTCTATACCTTCATGAAGACTCTCGACTGCGTGTTATACATCGTGATCTCAAAGCAAGCAACATTCTCTTAGACGAAGAGATGAATCCGAAGATAGCAGATTTTGGCATGGCAAGACTGTTTTTGGTGGATCAAACTCATGCAAATACAAGAAGAATTGTTGGAACCTGTGGATATATGGCACCAGAATATGCAATGCATGGACAATTTTCAGTGAAATCAGATGTCTTCAGTTTTGGTGTACTAGTTCTTGAGATTTTAAGCGGCCAAAAAAACAGGGGCATTCATCATGCGGAGAATGTTGAGGATCTACTAAGTTTCGCATGGAGAAGTTGGAAGGAGCAGACAGCTATAAATATTGTAGATCCATCATTAAACAACAATTCACGAAATGAAATGATGAGATGTATCCATATTGGTTTACTTTGTGTTCAAGAAAATTTAGCGGACAGACCAACCATGGCTACCATTATGCTCATGCTTGATAGCTATTCTCTAAGTCTCCCAATCCCCGCCAAACCTGCATTTTATATGAACAGTAGAACTAGAAGTCTTCCAGGATCAAGTGAATCGATAATTAAATCAGCTCAAGAATCAGAAAATGAGGTTTCAGTAACTGAGCTATACGCTCGGTAG 1965 0.4056 MIVPIASNILIIERTIRMPGVSSMLLFFLFVILISQVSAQLTCDYSKVGNYTASSTYNTNLNTLLSTLSSNTEINYGFYHFSHGQSPDRVNAIGLCRGDVEPDECRSCLNYARSNLTQDCPNQKEAIIQYDNCMLRYSNRTIFGNLEFQPGYCVRNLSNVMDGDQSKQALANLMGKLKGVAASGDSRRKYATDNVTTGNFETIYGLVQCTPDLSETQCNDCLDGAISDILPCCNLRFCGGGVRPSCNIRFENYRFYKQTTVLDPEESGNTIVIAISIVVPTVVVVFLICLCLYLRRRKARKNLVVKENDVEDEIKIAESLQFNFNTIQVATEDFSDSNKLGQGGFGAVYRGRLSTGQMIAVKRLSRDSGQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGNERLLVYEYVPNKSLDYFIFDPNMKAQFDWESRYKIIRGIARGLLYLHEDSRLRVIHRDLKASNILLDEEMNPKIADFGMARLFLVDQTHANTRRIVGTCGYMAPEYAMHGQFSVKSDVFSFGVLVLEILSGQKNRGIHHAENVEDLLSFAWRSWKEQTAINIVDPSLNNNSRNEMMRCIHIGLLCVQENLADRPTMATIMLMLDSYSLSLPIPAKPAFYMNSRTRSLPGSSESIIKSAQESENEVSVTELYAR* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1102 654 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1102 654 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Gso20g1102 654 ProSiteProfiles Gnk2-homologous domain profile. 148 255 IPR002902 -
Gso20g1102 654 Gene3D Transferase(Phosphotransferase) domain 1 410 611 - -
Gso20g1102 654 Gene3D Phosphorylase Kinase; domain 1 296 409 - -
Gso20g1102 654 Pfam Salt stress response/antifungal 159 253 IPR002902 -
Gso20g1102 654 Pfam Salt stress response/antifungal 43 139 IPR002902 -
Gso20g1102 654 SMART serkin_6 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1102 654 SUPERFAMILY Protein kinase-like (PK-like) 320 629 IPR011009 -
Gso20g1102 654 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 19 634 - -
Gso20g1102 654 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 634 - -
Gso20g1102 654 CDD STKc_IRAK 340 605 - -
Gso20g1102 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Gso20g1102 654 ProSiteProfiles Gnk2-homologous domain profile. 39 142 IPR002902 -
Gso20g1102 654 Gene3D - 38 141 IPR038408 -
Gso20g1102 654 Gene3D - 150 255 IPR038408 -
Gso20g1102 654 Pfam Protein tyrosine and serine/threonine kinase 337 602 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1102 Gso-Chr20 40828316 40831775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1102 18 654 Receptor kinase-like Gene Family AT4G21410 50.659 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1102 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1102 - - gmx:100787411 1145.18