Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1101 ATGATCGTACCTATAGCTTCCAATATTCTGATTATCGAGAGGAAGATCAGGATGGCTGGTGTTTCTTCCATGCTTCTTTTCTTTCTATTTGTAATATTAATATCTCAAGTCAGTGCCCAGTTAAGCGTAACCTGTGATTACAGAAAGGTCGGAAATTACACAGCAAATAGCACCTATAACACCAATCTGAACACCCTTTTATCCACTCTCTCTTCCAACACAGAAATTAATTATGGTTTCTACAACTTCTCACATGGTCAAAGCCCAGATAGAGTCAACGCCATTGGGCTCTGCAGGGGAGATGTGGAGCCAGATGAGTGCCGCAGTTGCCTCAACTATGCCAGAAGCAATCTCACACAAGATTGTCCAAATCAGAAAGAGGCAATTATACATTTTGACAATTGCATGTTGCGCTACTCCAACCGCACAATATTTGGCCAAGTGGAAAATTTTCCTGGTCTCTATATGTGGAACTTAAAAAATGCAACGGACGTGGATGAGTTCAATCAAGTGCTCGCAAACTTAATGAGGAACCTCAAAGGAGTAGCTGCATCGGGTGACTCTCGTCGTAAGTATGCTACGGATGATCAAACTAGTGGAAATTTTGAAACCATATATGGTCTTGTGCAGTGCACCCCTGATTTGTCTGAGACACAATGCAATGACTGCTTGGATGGGACTATCTCAGAAATCCCAACTTGCTGTAATAATAAGGTCGGTGGTAGAGTTATTAGACCCAGTTGTAATATTAGATACGAAGTCTACCGCTTCTACGAACAGACGACTGTATTGGACCCAGAGATACCACCATCATCGCCAGCACCACCTCCGTTCGCCGACACTTCCCCAGAACCAGAAGAAAGTGGCAACACAATAGTAATTGTCATCTCCATAGTTGTGCCAACTGTTGTTGTCGTTTTGCTCATTTGTCTCTGCTTATATTTAAGGAGGAGGAAGGCTAGGAAAAATCTTGTAGTTAAAGAAGATGAAGTTGAGGATGAAATTAAAATTGCCGAGTCATTGCAATTTAACTTCAACACAATACAAGTTGCTACAGAAGACTTCTCTGATTCTAATAAACTTGGACAAGGTGGATTTGGAGCTGTTTACAGGGGTAGGCTCTCTACTGGACAGATGATTGCAGTTAAAAGGTTGTCAAGAGATTCTGGCCAAGGAGATACAGAATTTAAGAATGAGGTGCTTTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTTGGTTTCTGCTTGGAAGGAAATGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTATTTCATATTTGATCCAAACATGAAAGCACAATTGGATTGGAAAAGTCGCTACAAAATCATTAGAGGTATAGCTCGAGGCCTTCTATACCTCCACGAAGATTCTCGACTGCGTATTATACATCGTGATCTCAAAGCAAGCAACATTCTCTTAGACGAAGAGATGAGTCCGAAAATAGCAGATTTTGGCATGGCAAGACTGGTTTTAGTGGATCAAACTCAAGCAAATACAAGTAGAATTGTCGGAACCTATGGATATATGGCACCAGAATATGCAATGCATGGACAATTTTCAGTGAAATCAGATGTCTTCAGTTTTGGTGTACTAGTTCTTGAGATTTTAAGCGGCCAAAAAAACAGTGGCATTCATCATGGGGAGAATGTTGAGGATCTACTAAGTTTCGCATGGAGAAGTTGGAAGGAGGGGACAGCTATAAATATTTTAGATCCATCATTAAACAACAATTCACGAAATGAAATGATGAGATGCATCCATATTGGTTTACTTTGTGTTCAAGAAAATTTAGCAGACAGACCAACCATGGCTAACATTATGCTCATGCTTAATAGCTATTCTCTAAGTCTCCCAATTCCCGCCAAGCCTGCATTTTATATGAACAGTAGAACTGAAAGTCTTCCAGAGATGCAGTCATGGGAGTACAACTCAAGGGAAACAGGATCAAGTGAATTGATAATTAAATCAGCTCAAGAATCAGAAAATGAGGCTTCAATAACTGAGCTATACGCTCGGTAG 2064 0.405 MIVPIASNILIIERKIRMAGVSSMLLFFLFVILISQVSAQLSVTCDYRKVGNYTANSTYNTNLNTLLSTLSSNTEINYGFYNFSHGQSPDRVNAIGLCRGDVEPDECRSCLNYARSNLTQDCPNQKEAIIHFDNCMLRYSNRTIFGQVENFPGLYMWNLKNATDVDEFNQVLANLMRNLKGVAASGDSRRKYATDDQTSGNFETIYGLVQCTPDLSETQCNDCLDGTISEIPTCCNNKVGGRVIRPSCNIRYEVYRFYEQTTVLDPEIPPSSPAPPPFADTSPEPEESGNTIVIVISIVVPTVVVVLLICLCLYLRRRKARKNLVVKEDEVEDEIKIAESLQFNFNTIQVATEDFSDSNKLGQGGFGAVYRGRLSTGQMIAVKRLSRDSGQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGNERLLVYEFVPNKSLDYFIFDPNMKAQLDWKSRYKIIRGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMSPKIADFGMARLVLVDQTQANTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEILSGQKNSGIHHGENVEDLLSFAWRSWKEGTAINILDPSLNNNSRNEMMRCIHIGLLCVQENLADRPTMANIMLMLNSYSLSLPIPAKPAFYMNSRTESLPEMQSWEYNSRETGSSELIIKSAQESENEASITELYAR* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1101 687 Gene3D Transferase(Phosphotransferase) domain 1 431 632 - -
Gso20g1101 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Gso20g1101 687 MobiDBLite consensus disorder prediction 265 285 - -
Gso20g1101 687 SUPERFAMILY Protein kinase-like (PK-like) 341 658 IPR011009 -
Gso20g1101 687 ProSiteProfiles Protein kinase domain profile. 355 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1101 687 ProSiteProfiles Gnk2-homologous domain profile. 41 144 IPR002902 -
Gso20g1101 687 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Gso20g1101 687 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 654 - -
Gso20g1101 687 Gene3D Phosphorylase Kinase; domain 1 317 430 - -
Gso20g1101 687 Pfam Protein tyrosine and serine/threonine kinase 358 623 IPR001245 GO:0004672|GO:0006468
Gso20g1101 687 ProSiteProfiles Gnk2-homologous domain profile. 150 257 IPR002902 -
Gso20g1101 687 CDD STKc_IRAK 361 626 - -
Gso20g1101 687 SMART serkin_6 355 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1101 687 Pfam Salt stress response/antifungal 161 254 IPR002902 -
Gso20g1101 687 Pfam Salt stress response/antifungal 45 141 IPR002902 -
Gso20g1101 687 MobiDBLite consensus disorder prediction 268 282 - -
Gso20g1101 687 Gene3D - 40 143 IPR038408 -
Gso20g1101 687 Gene3D - 153 257 IPR038408 -
Gso20g1101 687 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 19 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1101 Gso-Chr20 40788760 40792418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1101 51 644 Receptor kinase-like Gene Family AT4G21410 55.483 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1101 PK_Tyr_Ser-Thr 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1101 - - gmx:100782800 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1101 20 40788760 40792418 Gso10g2265 10 49731321 49735339 GST