LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g1098	ATGGCAGACCTTTCTTGCATTCATCTTTTCTTTCTTTGTTGTCTATTTCTAAAATTTATACCTCAAGGCAACGCCAGCATGTTTCACACTGCATTCTGTGATAACAAGGAAGGGAACTACACAGCGAATAGCACCTACAACACCAACCTCAACACCCTTTTATCAAGTCTCTCTTCCCACACAGAAATTAACTATGGTTTCTACAACTTCTCATATGGTCAAAACCCAGACAAAGTAAACGCAATTGGGCTATGCAGAGGAGATGTTGAGCCACATGAGTGCCGCAGTTGCCTCAATGATTCCAGAGTCACAATTAAACAGTTTTGTCCAAACCAGAAAGAGGCACTTCTGTGGTTGAACACTAGCAAATGCATGTTGCGCTACTCACCCCGCTCGATATTTGGCATCATGGAAATTGAACCTAGCCAATCCTTGATGAACATAAACAATGTAACGGAACCGGATAAGTTCAGTCAAGCTCTCGCGAACTTAATGAGAAACCTCAAAGGTGTAGCCGCATCGGGTGACTCTCGTCGTAAGTATGCCACGGATAATGTAACTGCTTCAAGTTTTCAGACCATATATGGTATGGCAGAGTGCACCCCTGACTTGTCTGAGAAAGACTGCAATGACTGCTTGGATGGGGCTATCTCAAAAATCCCAACCTGTTGTCAGGACAAGATAGGTGGTAGAGTTCTTAGACCAAGTTGTAATATTAGATTTGAAAGCGCAAGCTTCTACGAAAATACGCCTATTTTAAACCCAGATGTACCACCACCATCTCCAGCAGTAGCAATTCCTCCCTCCATCAATAGCACTTCCCCAAAAGAAAGCAGCAACACAATACGAATTGTCATTGCCATAGTTGTTCCTACTGTTGTTGTTGTTCCCCTCATTTGTCTCTGCATATATTCAAGGAGGTCGAAGGCAAGAACTTCTTTAGTTAAACAACATGAAGATGATGATGAAATTGAAATTGCTCAGTCATTGCAATTCAACTTTGACACAATAAGAGTTGCTACAGAAGACTTCTCTGATTCTAATAAACTTGGACAGGGTGGATTTGGAGCAGTTTACAGGGGCAGGCTCTCCGATGGACAGATGATTGCAGTCAAAAGATTGTCAAGAGAATCCAGCCAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGGCTACTCATCTATGAATATGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAACCAAGAAAGCACAATTGAATTGGGAAATGCGATACAAAATCATTACAGGTGTTGCGCGAGGCCTTCTCTACCTTCATGAAGATTCTCATCTGCGTATTATACATCGTGATTTGAAAGCAAGTAACATACTCTTAAACGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTAATGGATCAAACTCAAGCAAATACAAAAAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAATTTTCAATGAAATCAGATGTCTTTAGTTTTGGTGTACTGGTTCTTGAGATCATAAGCGGCCATAAAAACAGTGGCATTCGTCATGGGGAGAATGTAGAGGATCTACTGAGCTTCGCATGGAGAAACTGGAGGGAGGGGACAGCTGTAAAAATTGTAGATCCATCATTAAACAACAATTCACGAAATGAAATGTTGAGATGTATCCATATCGGTTTGCTTTGTGTTCAAGAAAATTTAGCTGACAGACCAACAATGACGACCATTATGCTCATGCTTAATAGCTACTCTCTCAGTCTTCCAATTCCTTCTAAACCTGCATTTTATGTGAGCAGTAGAACTGGAAGCATTTCAGCCTCGCAGTCATGGGGGTATAGTTCAGGGGAATCAAGATCAAGAGAATTAACAATTAAATCAGCTCAAGAAGCAGAAAATGACTTTACTGATCCATACCCTCGCTAG	2025	0.4094	MADLSCIHLFFLCCLFLKFIPQGNASMFHTAFCDNKEGNYTANSTYNTNLNTLLSSLSSHTEINYGFYNFSYGQNPDKVNAIGLCRGDVEPHECRSCLNDSRVTIKQFCPNQKEALLWLNTSKCMLRYSPRSIFGIMEIEPSQSLMNINNVTEPDKFSQALANLMRNLKGVAASGDSRRKYATDNVTASSFQTIYGMAECTPDLSEKDCNDCLDGAISKIPTCCQDKIGGRVLRPSCNIRFESASFYENTPILNPDVPPPSPAVAIPPSINSTSPKESSNTIRIVIAIVVPTVVVVPLICLCIYSRRSKARTSLVKQHEDDDEIEIAQSLQFNFDTIRVATEDFSDSNKLGQGGFGAVYRGRLSDGQMIAVKRLSRESSQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLIYEYVPNKSLDYFIFDPTKKAQLNWEMRYKIITGVARGLLYLHEDSHLRIIHRDLKASNILLNEEMNPKIADFGMARLVLMDQTQANTKRIVGTYGYMAPEYAMHGQFSMKSDVFSFGVLVLEIISGHKNSGIRHGENVEDLLSFAWRNWREGTAVKIVDPSLNNNSRNEMLRCIHIGLLCVQENLADRPTMTTIMLMLNSYSLSLPIPSKPAFYVSSRTGSISASQSWGYSSGESRSRELTIKSAQEAENDFTDPYPR*	675

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso20g1098	674	MobiDBLite	consensus disorder prediction	637	674	-	-
	Gso20g1098	674	Gene3D	-	140	246	IPR038408	-
	Gso20g1098	674	Gene3D	-	25	132	IPR038408	-
	Gso20g1098	674	Pfam	Salt stress response/antifungal	149	243	IPR002902	-
	Gso20g1098	674	Pfam	Salt stress response/antifungal	33	129	IPR002902	-
	Gso20g1098	674	CDD	STKc_IRAK	350	615	-	-
	Gso20g1098	674	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	6	658	-	-
	Gso20g1098	674	ProSiteProfiles	Gnk2-homologous domain profile.	139	246	IPR002902	-
	Gso20g1098	674	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	465	477	IPR008271	GO:0004672\|GO:0006468
	Gso20g1098	674	SUPERFAMILY	Protein kinase-like (PK-like)	327	614	IPR011009	-
	Gso20g1098	674	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	6	658	-	-
	Gso20g1098	674	Pfam	Protein tyrosine and serine/threonine kinase	347	611	IPR001245	GO:0004672\|GO:0006468
	Gso20g1098	674	ProSitePatterns	Protein kinases ATP-binding region signature.	350	372	IPR017441	GO:0005524
	Gso20g1098	674	ProSiteProfiles	Gnk2-homologous domain profile.	28	133	IPR002902	-
	Gso20g1098	674	Gene3D	Phosphorylase Kinase; domain 1	304	419	-	-
	Gso20g1098	674	SMART	serkin_6	344	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso20g1098	674	MobiDBLite	consensus disorder prediction	637	655	-	-
	Gso20g1098	674	Gene3D	Transferase(Phosphotransferase) domain 1	420	621	-	-
	Gso20g1098	674	ProSiteProfiles	Protein kinase domain profile.	344	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g1098	Gso-Chr20	40758215	40761686	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso20g1098	9	633	Receptor kinase-like Gene Family	AT4G21410	50.850	0.0	630

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso20g1098		PK_Tyr_Ser-Thr	3.9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g1098	-		-	gmx:100305371	1258.05