Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1096 ATGGCCGTTGTTTCTTTTGGGCTCCTTTCCTTTGTTTTATGTCTCTTTATCATAATTACATCACAAGCCAGTGCCCAGAGATGTGATAACAGCAAAGGCAACTACACAATAAACAGCACCTACCACAACAACCTCAACACCCTCCTATCCAGCTTCTCTTCCCACGCAGAAATTAACTATGGTTTCTACAATTTATCACTTGGGCAAGAAGAACCAGACAAAGTATACGCCATTGGACTATGTAGAGGCGATCAAAACCTGACTGAATGCCTCAAATGCCTAGACGATTCCAGAGTCGCTCTCACAAAGGAGTGTCCAAACCAGAAAGAGGCAATTGATTGGAGAGCAGAGTGCATGCTGCGCTACTCTAACCGCTCCATATTTGGCCTAATAGAAACTCAACCTATGGTGCGAATCGTTTACCTGAAGAATGTAACGGGCTCAGTGGATGAATTCAATGATGTGCTGGAGAGCCTGATGAGGAATTTATCAAGCACAGCTGCATCAGGTGACTCTCGTCGCAAGTATGCAAGGGCTAGCAAACCTGCTCCAAGCTTTCAAACCGTATATGCTTTTACGCAGTGCACGCCTGATTTGTCATCGGAAGTATGCTTGAAGTGCTTGGAAGAAGCTATCGCAGAAATCCCAAATTGTTGTAGTGGCAAGGCTGGAGGCAATGTTTTAAAACCAAGTTGTAGAATTAGATTTGACCCCTACTCCTTCGACGGACCATTGGTGAGAATAGACCCAGACAACCCTACTTCACAAGGAAAGAGCAACACATCACGAACTAATGGAACTATCATTGCCATAGTAGTGCCAGTTGCTAGTGTTGTTTTGGTGCTCACTCTTTTCTGCATCTATCTAAGAGTGAAGAAGCCAAGAAATTTTTTTGAATTTAAAAGAGAAGATAATTATGAAGATGAAATTACATTATCCGAGTCATTGCATTTCAACTTTGACACCATACGAGTTGCTACAAATGAATTCACTGATTCTAATAAACTTGGACAAGGCGGATTTGGAGCTGTTTACAGAGGTCGGCTTTCCAATGGACAAGAGATTGCTGTCAAAAGGCTGTCAAGGGATTCTGGCCAAGGAGAAATTGAATTTAAAAATGAAGTGCTTTTAGTGGCCAAACTTCAACACCGAAATTTAGTTAGGCTACTTGGTTTCTGCCTAGAAGGAAGAGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTGTTTCATATTTGATCAAACCTTGAAAGCACAATTGGATTGGGAAAGGCGCTACAAAATCATTAGAGGTATTGCCCGAGGCCTTCTCTACCTTCATGAAGATTCTCGTCTGCGTATCATACATCGTGATCTCAAAGCAAGTAACATTCTCTTAGACCAAGAGATGAATCCTAAGATAGCTGATTTTGGCATGGCAAGACTGGTTTTAGTGGATCAAACTGAAGGAAATACAAATAGAATTGTTGGTACCTATGGATATATGGCACCAGAGTATGCAATGCATGGACAATTTTCAGTGAAATCAGATGTCTTCAGTTTTGGTGTACTGCTTCTTGAGATCATAAGCGGCCAGAAAAACAGAGGCATTCTTCGTGGGGAAAATGTAGAGGATCTACTAAGCTTCTCATGGAGAAACTGGAAGGAGGGAACAGCTATAAATATTGTAGATACATCATTAAACAACAATTCACGAAATGAAATGATGAGATGCATCCATATTGGTTTACTCTGTGTTCAAGAAAATTTAGCTGACAGACCAACCATGGCAGCCATTATAGAAATGCTAAATACCTATTCTCTCAGTCTCCCAATTCCTGCCGAACCTGCATTTTATACGAACAATAGAACTGTAAGTCTTCCAGACATGCAGTCACGGGAGTATAATTCAAGGGAAACAGGATCAAGTAAACTCATACTTGTTCAAGAATCAGAAAATGAAGCTTCAATTACTGAGCTACACCCTCGCTAG 1983 0.41 MAVVSFGLLSFVLCLFIIITSQASAQRCDNSKGNYTINSTYHNNLNTLLSSFSSHAEINYGFYNLSLGQEEPDKVYAIGLCRGDQNLTECLKCLDDSRVALTKECPNQKEAIDWRAECMLRYSNRSIFGLIETQPMVRIVYLKNVTGSVDEFNDVLESLMRNLSSTAASGDSRRKYARASKPAPSFQTVYAFTQCTPDLSSEVCLKCLEEAIAEIPNCCSGKAGGNVLKPSCRIRFDPYSFDGPLVRIDPDNPTSQGKSNTSRTNGTIIAIVVPVASVVLVLTLFCIYLRVKKPRNFFEFKREDNYEDEITLSESLHFNFDTIRVATNEFTDSNKLGQGGFGAVYRGRLSNGQEIAVKRLSRDSGQGEIEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDCFIFDQTLKAQLDWERRYKIIRGIARGLLYLHEDSRLRIIHRDLKASNILLDQEMNPKIADFGMARLVLVDQTEGNTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLLLEIISGQKNRGILRGENVEDLLSFSWRNWKEGTAINIVDTSLNNNSRNEMMRCIHIGLLCVQENLADRPTMAAIIEMLNTYSLSLPIPAEPAFYTNNRTVSLPDMQSREYNSRETGSSKLILVQESENEASITELHPR* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1096 660 Gene3D Phosphorylase Kinase; domain 1 295 405 - -
Gso20g1096 660 ProSiteProfiles Gnk2-homologous domain profile. 23 127 IPR002902 -
Gso20g1096 660 Pfam Protein tyrosine and serine/threonine kinase 333 600 IPR001245 GO:0004672|GO:0006468
Gso20g1096 660 ProSiteProfiles Gnk2-homologous domain profile. 133 241 IPR002902 -
Gso20g1096 660 Gene3D Transferase(Phosphotransferase) domain 1 406 607 - -
Gso20g1096 660 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Gso20g1096 660 CDD STKc_IRAK 336 601 - -
Gso20g1096 660 Pfam Salt stress response/antifungal 28 124 IPR002902 -
Gso20g1096 660 Pfam Salt stress response/antifungal 149 237 IPR002902 -
Gso20g1096 660 ProSiteProfiles Protein kinase domain profile. 330 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1096 660 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 645 - -
Gso20g1096 660 Gene3D - 21 126 IPR038408 -
Gso20g1096 660 Gene3D - 136 241 IPR038408 -
Gso20g1096 660 SUPERFAMILY Protein kinase-like (PK-like) 318 630 IPR011009 -
Gso20g1096 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Gso20g1096 660 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 645 - -
Gso20g1096 660 SMART serkin_6 330 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1096 Gso-Chr20 40742906 40746428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1096 32 660 Receptor kinase-like Gene Family AT4G21410 49.158 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1096 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1096 - - gmx:100784223 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2057 1 56943734 56946915 Gso20g1096 20 40742906 40746428 PCT