Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1095 ATGGCTTCCTTCAAGTTTGTCTACCTCTTTATCCTTCTCACCTTGACCAACAATTTCGTAACCACTATAGCACAGTTCGACCGTGGTGATCTGAACTACGATTGTTCAGACAACCTAACCACTCCAAACAGCACCGTCCAATTGAACGTGAAGACCCTTCTGTCTTATTTATCTTCCAACGCCACAGCTAACAAGCAATACTACAACACCACAGTTGGCAGTAGAAACCACTCCGAGAGTACTGTCTATGGAATGTTCCTGTGCTGGGGTGACTTACCCCCTCAGCTTTGTAGCCAGTGCGTCGCAAATGCAACCAAAGACATACTCTCCGATTCATATCCAAATTGTTCCTTGTCCACAAATGCTCGGATTGTGCACGGAGACTGCATGATTCGCTTTTCCAACCGTTCTTTCTTCTCTACCGTTGACTCAAGTTTTTACTTCGCTGCATGCTCCATTTCTGATGCGTTCGACAAAACAAACTGGATGAGTGTGCTTTCCAAAACAATTGACGAAGTCGCTGATGAGGCAGCGAATTCGACTGTTGGTGCAAAGAAATATGCAACAAAGGAAGCAAGGATATCTGGAGGATTTCAGAGCCTTTACTGTGAGGCACAGTGCACATCTGACCTCTCTCCCCAAGATTGCCGAAAATGTCTAAATGCTTCCATAGCGAATAGTCAACAGTTTTGTGAAGGTTTAGGGTCACCTGTTTCCACTCGTAGCTGTAGTATTAGGTTCGATGTGTACCCTTTCTATCGCCCCAGTACCGCTCTGGCACCAACAGGAGAGGTTTCCACAAATTTTTCCACCACAGACTCACAACATCCTGCTTATCTTTCCCACAATTGTTCCAGCAACGAAACCATGATCACCACGGACCGCGCTTTTCTATCCAATCTCAAGTCCCTTCTCTCATCCTTGTCTTCCAATTTCACCACCACCAAAACCGGTTTCTCCAAGACCACCGTCGAGGGCAAAAACCCATCTGACACGGTGAGTGGACTCTTCATGTGCCGCGGGAACCTTTCCACTATTCTCTGTCAGCAATGTGTCCTAAATGCGACCCAACGAATATCCTCAGAGTGCCCCTCTTCCAAAGAGGCCATCATATGGTACAATCACTGCTTGCTTCGCTATTCCAATAATCGCTCATCCCTTATCTCCACAGTGGACACAACTCCAACCTATCAAAACTTCAGTATCGTCAATACTTCCAATCCCAACCAGCTGCAAAGCTTCTTCACTTGGACTATGGCGACTACTTTACCTGAAGTGAAGTCCGTGATAGAGGACAGTACCATTAAGAATTATGGAACAAAAGAAGTAAAACTGAATGATCAGCAAACCCTCTATACTCTTGCTCAATGTACGCCAGATCTATCTAATGACGATTGCGGCAGCTGTTTAGACAAGATTTTCAAATACGAAATTCCATGGTGTTGTTTGGCGAGTCCAGAGGGAAAAGTACTATCTCCTAGCTGCTATATCATGTTTGGGTTGTCCCCTTTTTACACAGATGATGACCGAGTTGAGGCGTACAGGCAACCCAGTCCTCCTCCAACAAGTGCAGAAAACAATAAAGGTAGGTCACGGTCAATTATTATCATAGTTGTTGTCCTCATCGTTGTCTCGGCGGTACTCCTTTCCTTTTGCTGCTATTTGCGATGGAGAAAAACAAGCAAAAGTATTATCTACAAAACTCTTCTCAGAAAAAACTTTGGTCATGAAAGTATCAATTTAGAGGGATTGCAATTCGATTTGATTAAAATTAAAGCAGCAACAGATAATTTCTCACATGAGAATAAAATTGGAAAAGGTGGATTCGGAGAAGTTCATAAGGGTATTCTTTGTGATGGTCGACGTGTAGCTGTCAAGAGGCTTTCAACAAGTTCTAAGCAAGGTTCAACTGAGTTTAAGAATGAAATTTTATTAATAGCCAAGTTACAGCATAGAAATCTTGTGACATTTATAGGTTTCTGCTTAGAAGATCAAGAGAAAATTCTTATTTATGAATATATGCCAAATGGGAGCCTTGATTACCTTTTATTTGGTGGTCAACAACAAAAATTAAGTTGGTTGGAGCGTTACAAGATCATAAAAGGAATTGCTATGGGAATTCTTTATTTACATGAACATTCTCGACTTAAAGTTATACATCGTGATCTTAAACCTAGTAATATTTTATTAGATGAAAATATGAATCCTAAAATATCAGATTTTGGCATGGCTAGAATTGTTGAAATTGATCAAGATCTTGGAAATACTAATAGAATTGTTGGAACATATGGCTATATGTCACCAGAATATGCAATGCTTGGACAATTTTCTGAAAAGTCAGATATATTTAGTTTTGGCGTCATGATTCTTGAGATTATTACTGGAAAAAGGAGCGTGAATGCTTATGAGTCACACAATGTTGTGGAAGGGCTCATGGGTTATGTTTGGAGACAATGGAAGGATCAGGAACCGCTAAGCATCTTGGATTCAAACATAAAAGAAAGATATTCACAAATGGAAGTTCTTAGATGCATTCATATTGGTTTATTGTGTGTTCAAGAAAATCTAAATGATAGACCTACAATAACAACGATTATTTCATATTTTAACAACCACTCACTTGAATTGCCATCTCCACAAGAACCAGCATTTCTCTTACACAGACGTAGAATGGATCCAGAGATCGTTATACAACAAGAATCAAGTTTGAGTCAAGCTGCCAATGGTTCTGTGCTATTCTCTATTAATGAGATGTCGGCTAGTGATTTTTATCCTCGATAA 2781 0.4067 MASFKFVYLFILLTLTNNFVTTIAQFDRGDLNYDCSDNLTTPNSTVQLNVKTLLSYLSSNATANKQYYNTTVGSRNHSESTVYGMFLCWGDLPPQLCSQCVANATKDILSDSYPNCSLSTNARIVHGDCMIRFSNRSFFSTVDSSFYFAACSISDAFDKTNWMSVLSKTIDEVADEAANSTVGAKKYATKEARISGGFQSLYCEAQCTSDLSPQDCRKCLNASIANSQQFCEGLGSPVSTRSCSIRFDVYPFYRPSTALAPTGEVSTNFSTTDSQHPAYLSHNCSSNETMITTDRAFLSNLKSLLSSLSSNFTTTKTGFSKTTVEGKNPSDTVSGLFMCRGNLSTILCQQCVLNATQRISSECPSSKEAIIWYNHCLLRYSNNRSSLISTVDTTPTYQNFSIVNTSNPNQLQSFFTWTMATTLPEVKSVIEDSTIKNYGTKEVKLNDQQTLYTLAQCTPDLSNDDCGSCLDKIFKYEIPWCCLASPEGKVLSPSCYIMFGLSPFYTDDDRVEAYRQPSPPPTSAENNKGRSRSIIIIVVVLIVVSAVLLSFCCYLRWRKTSKSIIYKTLLRKNFGHESINLEGLQFDLIKIKAATDNFSHENKIGKGGFGEVHKGILCDGRRVAVKRLSTSSKQGSTEFKNEILLIAKLQHRNLVTFIGFCLEDQEKILIYEYMPNGSLDYLLFGGQQQKLSWLERYKIIKGIAMGILYLHEHSRLKVIHRDLKPSNILLDENMNPKISDFGMARIVEIDQDLGNTNRIVGTYGYMSPEYAMLGQFSEKSDIFSFGVMILEIITGKRSVNAYESHNVVEGLMGYVWRQWKDQEPLSILDSNIKERYSQMEVLRCIHIGLLCVQENLNDRPTITTIISYFNNHSLELPSPQEPAFLLHRRRMDPEIVIQQESSLSQAANGSVLFSINEMSASDFYPR* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1095 926 ProSitePatterns Protein kinases ATP-binding region signature. 604 626 IPR017441 GO:0005524
Gso20g1095 926 CDD STKc_IRAK 604 871 - -
Gso20g1095 926 Pfam Salt stress response/antifungal 284 382 IPR002902 -
Gso20g1095 926 Pfam Salt stress response/antifungal 415 499 IPR002902 -
Gso20g1095 926 Pfam Salt stress response/antifungal 160 249 IPR002902 -
Gso20g1095 926 Pfam Salt stress response/antifungal 35 135 IPR002902 -
Gso20g1095 926 Gene3D Transferase(Phosphotransferase) domain 1 674 877 - -
Gso20g1095 926 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 520 916 - -
Gso20g1095 926 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 272 507 - -
Gso20g1095 926 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 16 263 - -
Gso20g1095 926 Gene3D Phosphorylase Kinase; domain 1 560 673 - -
Gso20g1095 926 ProSiteProfiles Gnk2-homologous domain profile. 144 252 IPR002902 -
Gso20g1095 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Gso20g1095 926 ProSiteProfiles Gnk2-homologous domain profile. 279 385 IPR002902 -
Gso20g1095 926 Pfam Protein kinase domain 599 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1095 926 SMART serkin_6 598 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1095 926 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 263 - -
Gso20g1095 926 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 272 507 - -
Gso20g1095 926 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 520 916 - -
Gso20g1095 926 ProSiteProfiles Protein kinase domain profile. 598 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1095 926 ProSiteProfiles Gnk2-homologous domain profile. 28 138 IPR002902 -
Gso20g1095 926 SUPERFAMILY Protein kinase-like (PK-like) 582 899 IPR011009 -
Gso20g1095 926 Gene3D - 143 252 IPR038408 -
Gso20g1095 926 Gene3D - 393 504 IPR038408 -
Gso20g1095 926 Gene3D - 277 384 IPR038408 -
Gso20g1095 926 Gene3D - 30 138 IPR038408 -
Gso20g1095 926 ProSiteProfiles Gnk2-homologous domain profile. 396 504 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1095 Gso-Chr20 40721758 40733461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1095 272 926 Receptor kinase-like Gene Family AT4G05200 41.892 1.21e-175 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1095 Pkinase 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1095 - - gmx:100785282 1727.61