Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1090 ATGGATATGTTTAAGCAGAAGGAGAAGAAGAAAAACACAGGCCGCAAAAAGATTGAGATCAAGAAGCTTGACAAGGGTAGCAACAAGCAAGTGACGTTCTCAAAAAGAAGAACAGGACTGTTCAAAAAAGCCAGCGAACTCTGCATTTTATGCAATGTTTATGTAGCCATAATTGTGTTTTCTCCTGCTGACAAATTGTTCTGCTTTGGCCATCCAGATATTGACAGTATAATTGGTCGCTATCTCAAAGGAGACAATGCAGAGTTTGAATCAGCAAAGTCGTCAAAAGAAAAATCAGTGTCATGTGAGGAACGTAACAGACAATATGAAGAGGCGATGAAGAAGTTGGAGTTGGAAAAGAAGAACTTGGCACAAATTGAAGTTTTGACTAAAGGTTGGAATAGAAGTTGGTGGGACGATCCCATTGATCAGATGACTGATCTTCAGTTGGAACAGTTTATGGTGTCCATTTACGAGTTAAGGAAAAAACTAGCAGAAAGGGCAGGTGAATTGATGATGTAA 522 0.3927 MDMFKQKEKKKNTGRKKIEIKKLDKGSNKQVTFSKRRTGLFKKASELCILCNVYVAIIVFSPADKLFCFGHPDIDSIIGRYLKGDNAEFESAKSSKEKSVSCEERNRQYEEAMKKLELEKKNLAQIEVLTKGWNRSWWDDPIDQMTDLQLEQFMVSIYELRKKLAERAGELMM* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1090 173 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Gso20g1090 173 PANTHER MADS BOX PROTEIN 10 173 - -
Gso20g1090 173 Gene3D - 26 123 IPR036879 GO:0003677|GO:0046983
Gso20g1090 173 SUPERFAMILY SRF-like 14 90 IPR036879 GO:0003677|GO:0046983
Gso20g1090 173 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Gso20g1090 173 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Gso20g1090 173 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Gso20g1090 173 CDD MADS_MEF2_like 14 84 IPR033896 GO:0000977|GO:0045944
Gso20g1090 173 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Gso20g1090 173 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 10 173 - -
Gso20g1090 173 Coils Coil 99 129 - -
Gso20g1090 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1090 Gso-Chr20 40657303 40657824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1090 14 165 Type I MADS-box Gene Family AT2G24840 41.026 2.53e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso20g1090 SRF-TF 7.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1090 - - gmx:100782074 324.324