Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1089 ATGTCAAAGAATAAGAAGTCTAGCTTAGGACGCCAAAAGATCCCAATTGAAAAAATACCCAAAAAGAGTCATTTGCAAGTTACATTCTCTAAGCGTCGTTCGGGACTGTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGTAGAGATTGCAATTGTGGTTTTCTCTCCCGCGGATAAGGCATTCTCTTTTGGCCATCCAGAAGTTGAGTCCCTCATCGATCGTTACACCACGCGAAACCCTCCACAAGAGTCTAGTGCACACCACCTCGTTGAGGCACACCGAAATGCCAATGTTTGTGATCTCAACATGCAACTCACTCAGGTTTTCAATCACTTGGAGATTGAAAAGAAGCGAACAGATGACCTAGACCATGTGAGGAAAGCTAGGCAGAGGCAATTTTGGTGGGAGAGTCCTATTGATGAGCTTGGATTGAATGAGTTGCTGCAGTTAAAGGCCTCTATTGAGGAGCTAAAAAAGAACATAGAAAAACATGCTAGCAAATTCATGATTGAACACTCTAGTAATATACCTTCTTCATCAATTCTTGGACCTAATAATGGACTTGGTCCACTTGTACGTTATGACACCTTTGAGAACAAACCTGGTGCTGAGATTGGTATTGCTTCATCAATTCCAAATGCCCATTATCTCGCTTTTCGCACTGGGTATCTTTGA 681 0.4273 MSKNKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYTTRNPPQESSAHHLVEAHRNANVCDLNMQLTQVFNHLEIEKKRTDDLDHVRKARQRQFWWESPIDELGLNELLQLKASIEELKKNIEKHASKFMIEHSSNIPSSSILGPNNGLGPLVRYDTFENKPGAEIGIASSIPNAHYLAFRTGYL* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1089 226 CDD MADS_MEF2_like 10 77 IPR033896 GO:0000977|GO:0045944
Gso20g1089 226 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Gso20g1089 226 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Gso20g1089 226 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Gso20g1089 226 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 179 - -
Gso20g1089 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Gso20g1089 226 SUPERFAMILY SRF-like 10 90 IPR036879 GO:0003677|GO:0046983
Gso20g1089 226 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Gso20g1089 226 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Gso20g1089 226 Gene3D - 89 183 - -
Gso20g1089 226 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Gso20g1089 226 Coils Coil 146 169 - -
Gso20g1089 226 PANTHER MADS BOX PROTEIN 8 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1089 Gso-Chr20 40643808 40644489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1089 6 180 Type I MADS-box Gene Family AT5G60440 53.371 2.28e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso20g1089 SRF-TF 3.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1089 - - gmx:100793705 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1089 20 40643808 40644489 Gso10g2268 10 49753448 49754405 GST