Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1088 ATGGCATCACCGGCATCCAACCCCCAAAGCGCCGAGACTAAGAAAAGCCGTGGCCGCCAAAGGGTTGACATTAAGAAAATGAGCAACGAGGCCAACCTCCAAGTCACGTTCTCTAAGCGCCGCAGCGGGCTTTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGCGGCGCTGAAGTGGCTCTGGTGGTGTTCTCGCCGGGGCAGAAGGTGTTCTCCTTCGGCCACCCCAGCGTGGATGGCGTGATTGAGCGCTATCTCACTGGGGTCGCACCGCCGGAGGCGGACAACATGAATTACATCGATGTGCACCGCATGGCCAAAGTGGTTGACCTTAACGCCCAGCTGACTCATATCAAAGATCAGCTCGAGGCGGAGAGGAAGCGCGCCAAGGAGCTGGGCGGCATTCAGAAGGAGGCCGAAACCCATCTGTGGTGGGCCCGGCCCGTGGCCGACATTACCGATATTAACAACCTGCTGAAGCTGAAAAAAGCTTTCCAGCAGCTGAAACAAGATGTGTCCGGTCTTGCTGGTATGGCTTTGTTCCAGTCTGTTGCAAATGGAAACCCGGGGCATCAGTTTTTTGCTGGGGCTTCTTCCTCAGCCGTTCCCAATGTTGTGCTTCAGTCACAACCACTGCCAGTGGCCCAGGTGTTCCCTCCTGCTGTTCCACAGATGATGTTTCCACCACCCATGTTTGAGAACTACATGGTGAACCCCAATGGGTTTGATGACATGGGAATGGGAGGAGGAGGATTTGGAGGAGCAGGACCTTCTAGTGCTGGTGGTGGTGGTGGTGGTTTCTTTTGA 807 0.5527 MASPASNPQSAETKKSRGRQRVDIKKMSNEANLQVTFSKRRSGLFKKASELCTLCGAEVALVVFSPGQKVFSFGHPSVDGVIERYLTGVAPPEADNMNYIDVHRMAKVVDLNAQLTHIKDQLEAERKRAKELGGIQKEAETHLWWARPVADITDINNLLKLKKAFQQLKQDVSGLAGMALFQSVANGNPGHQFFAGASSSAVPNVVLQSQPLPVAQVFPPAVPQMMFPPPMFENYMVNPNGFDDMGMGGGGFGGAGPSSAGGGGGGFF* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1088 268 Coils Coil 108 132 - -
Gso20g1088 268 PANTHER MADS BOX PROTEIN 17 175 - -
Gso20g1088 268 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Gso20g1088 268 Gene3D - 96 181 - -
Gso20g1088 268 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 17 175 - -
Gso20g1088 268 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Gso20g1088 268 SUPERFAMILY SRF-like 18 91 IPR036879 GO:0003677|GO:0046983
Gso20g1088 268 MobiDBLite consensus disorder prediction 1 22 - -
Gso20g1088 268 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Gso20g1088 268 CDD MADS_MEF2_like 18 88 IPR033896 GO:0000977|GO:0045944
Gso20g1088 268 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Gso20g1088 268 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Gso20g1088 268 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Gso20g1088 268 Gene3D - 29 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1088 Gso-Chr20 40630350 40631506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1088 13 200 Type I MADS-box Gene Family AT5G60440 48.168 9.32e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso20g1088 SRF-TF 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1088 - - gmx:100780986 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1088 20 40630350 40631506 Gso10g2269 10 49759821 49760808 GST