Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1087 ATGTCTGGCCCAAAGAAAAGCCGTGGCCGCCAAAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAACCTTCAAGTCACCTTCTCCAAGCGCCGCAGTGGGCTTTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGGCGCTGACGTGGCTCTCGTTGTTTTCTCTCCCGGCGAGAAGGTTTTCTCCTTCGGCCACCCCAACGTGGACGCCGTCATAGACCGCTATCTCGGGCGGGCCCCACCGACGGAGTCTTTCATCGAGGCCCACCGCGTCGCCAACGTGCGTGAGCTCAACGCGCAGCTCACTCAGATCAACAACCACCTAAACAATGAGAGGAAGCGGGCCGAGGAGCTCAATCTAATGAAGAAGGGAGCCCAAGCCCAGCTTTGGTGGGCCCGACCCTTGGATGGGATGAGCATTGCCCAGCTGAAGCAGTTCAAGGCGGCGTTGGAGGAGCTGAAGAAGCAGGTTGCGCGTCTTGCTGATAGGGCCATGCTTCAGAGTGTTACAAACCCTACTCTTCAATTTTTCCCTGGGGTTTCTTCCTCTTCCAATTCCAACCTTGTGCATCAGCAACACCCACTGCAACCCCAGGTGTTCCCCCCACACCTGATTCAGCCACCAATGCTTCAGCACTTCATGTTTCATGATGGGAGTATGATGCGCCACCATGGATTTAATAACATGGGAATGGGAGGATATGGACCTGCTTTTGATTCATGTTGA 729 0.5418 MSGPKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDAVIDRYLGRAPPTESFIEAHRVANVRELNAQLTQINNHLNNERKRAEELNLMKKGAQAQLWWARPLDGMSIAQLKQFKAALEELKKQVARLADRAMLQSVTNPTLQFFPGVSSSSNSNLVHQQHPLQPQVFPPHLIQPPMLQHFMFHDGSMMRHHGFNNMGMGGYGPAFDSC* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1087 242 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Gso20g1087 242 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Gso20g1087 242 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Gso20g1087 242 Coils Coil 92 129 - -
Gso20g1087 242 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Gso20g1087 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Gso20g1087 242 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Gso20g1087 242 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Gso20g1087 242 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Gso20g1087 242 Coils Coil 144 164 - -
Gso20g1087 242 Gene3D - 88 175 - -
Gso20g1087 242 PANTHER MADS BOX PROTEIN 7 193 - -
Gso20g1087 242 MobiDBLite consensus disorder prediction 1 21 - -
Gso20g1087 242 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Gso20g1087 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1087 Gso-Chr20 40617763 40618491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1087 5 185 Type I MADS-box Gene Family AT5G60440 53.723 2.52e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso20g1087 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1087 - - gmx:100780445 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1087 20 40617763 40618491 Gso10g2270 10 49770954 49771697 GST