LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g1086	ATGTCTGGCCCAAAGAAAAGCCGTGGCCGCCAAAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAACCTTCAAGTCACCTTCTCCAAGCGCCGCAGCGGGCTTTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGGCGCTGACGTGGCTCTCGTTGTTTTCTCTCCCGGCGAGAAGGTTTTCTCCTTCGGCCACCCCAACGTGGACGCCGTCATAGACCGCTATCTCGAGCGGGCCCCACCCACGGAGTCTTTCATGGAGGCTCACCGCATGGCCCACGTGCGTGACCTCAACGCGCAGCTCACTCAGATCAGCAACCACCTTGACGCCGGGAGGAAGCGCGCCGAGGAGCTGAATCTCATGAAGAAGGAAGCCCAGGCCCACCTATGGTGGGCCCGGCCCGTGGATGGGATGAGCATGGCCCAGATGAAGCAGTTCAAGGCGGCGTTGGAGGAGCTGAAGAAGCAGGTGGCGCGGCTTGCTGATAGGGCTATGCTTCAGAGTGTTACAAACCCTACCCATGAGTTTTTCCCTGCTGCTGGGGTTTCTTCCTCTTCCTCTTCCTCTTCCAATTCCAATTCCAACCCACTGTCACCTCAGGTGTTCTCCCCACACCTGATTCAGCCACCAATGCTTCAGAACTTTATGAGCATGATGCCGCGCCACCATGGGTTTAATTACATGGGAATGGGAGGATATGGACCTGCTGCAGGTTTCTTTTGA	726	0.5606	MSGPKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDAVIDRYLERAPPTESFMEAHRMAHVRDLNAQLTQISNHLDAGRKRAEELNLMKKEAQAHLWWARPVDGMSMAQMKQFKAALEELKKQVARLADRAMLQSVTNPTHEFFPAAGVSSSSSSSSNSNSNPLSPQVFSPHLIQPPMLQNFMSMMPRHHGFNYMGMGGYGPAAGFF*	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso20g1086	241	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	17	64	IPR002100	GO:0003677\|GO:0046983
	Gso20g1086	241	PANTHER	MADS BOX PROTEIN	7	203	-	-
	Gso20g1086	241	SUPERFAMILY	SRF-like	9	85	IPR036879	GO:0003677\|GO:0046983
	Gso20g1086	241	CDD	MADS_MEF2_like	9	78	IPR033896	GO:0000977\|GO:0045944
	Gso20g1086	241	SMART	madsneu2	8	67	IPR002100	GO:0003677\|GO:0046983
	Gso20g1086	241	Gene3D	-	88	176	-	-
	Gso20g1086	241	MobiDBLite	consensus disorder prediction	180	204	-	-
	Gso20g1086	241	PRINTS	MADS domain signature	10	30	IPR002100	GO:0003677\|GO:0046983
	Gso20g1086	241	PRINTS	MADS domain signature	30	45	IPR002100	GO:0003677\|GO:0046983
	Gso20g1086	241	PRINTS	MADS domain signature	45	66	IPR002100	GO:0003677\|GO:0046983
	Gso20g1086	241	Coils	Coil	144	164	-	-
	Gso20g1086	241	MobiDBLite	consensus disorder prediction	1	21	-	-
	Gso20g1086	241	ProSiteProfiles	MADS-box domain profile.	8	68	IPR002100	GO:0003677\|GO:0046983
	Gso20g1086	241	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL62	7	203	-	-
	Gso20g1086	241	Gene3D	-	20	87	IPR036879	GO:0003677\|GO:0046983
	Gso20g1086	241	MobiDBLite	consensus disorder prediction	180	203	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g1086	Gso-Chr20	40612863	40613642	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso20g1086	5	172	Type I MADS-box Gene Family	AT5G60440	55.429	1.52e-59	188

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Gso20g1086		SRF-TF	1.2e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g1086	-		-	gmx:100779916	437.573