Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1066 ATGGATCCTGTTGAGCAAATTTCTGAAGAGTGGAGTTCTCTTAGTGGATTCTACACAGCTGAGGAAGCTGACTTTATGAGCCAGTTGCTTGGTAACTGTTCACTCCCTGAGAACCTGTGTGGAAACTTCAATTTGGGAATTCCATCTGCAATATGGCCTGGCCATGAATCAACAATAGTGAGCGTGACAGGAATCAATGAAAGTCCATATTTTCATGCAAATGCTGATAATAGTAATACTAATTATTTATGTTTTTCACAAGGAAGTAGCTTCACTGCTGATAGTAGCAATATTTTTCCTACTACAAGTGGTAATAAGTGTGATCCAGTAGCCAACATTGGCTACATGTCTGTGGGTTTTCCCTTGGGGGATGCCAAGTTTAGCCCATATAATGTTCAAGGGAGTGACAGCCAACAGATAAATGAAAACACTGATGAAGAGTTAGGTCTAGAGGTTATTGCTGACAAGAAATTGCAGGATCACCAGGAATGTGAAGTACTAGTTTCTGAAGCTGCACAAGAGGATATAAACACCAATCTGGAGAAGTCAGGAAAAAGATCTAGGGGCTCAATGCAGGTACGAAAGAGCAAGAAAAATGTTAAATCTATGAAGAAACCAAAATCTGATTCTATAAGTAACTCTGAGGAGGGTAGAAGTCCTGATCTTCAGGGTTTCTGCTCAGAGGATGATGACTCCAATGCTTCTCAGGAGCTAAATGGAGGAGGATCTTCAAGTTTGAGCCTCGAGGATTCTACATCTCTTAAGTTAAAGGGGAAAAAATCAACAGCTAATAGAGGTTCTGCTACTGATCCACAGAGTGTATATGCAAGGAGAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAACACCTTGTCCCCAATGGAACCAAGGTCGATATAAGCACCATGCTGGAGGAAGCTGTCAAATATGTGAAGTTTTTGCAACTCCAAATTAAGCTTCTGAGCTCAGATGATCTCTGGATGTACGCTCCCATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATATTACCCCAACCAAACAACCATAA 1062 0.4068 MDPVEQISEEWSSLSGFYTAEEADFMSQLLGNCSLPENLCGNFNLGIPSAIWPGHESTIVSVTGINESPYFHANADNSNTNYLCFSQGSSFTADSSNIFPTTSGNKCDPVANIGYMSVGFPLGDAKFSPYNVQGSDSQQINENTDEELGLEVIADKKLQDHQECEVLVSEAAQEDINTNLEKSGKRSRGSMQVRKSKKNVKSMKKPKSDSISNSEEGRSPDLQGFCSEDDDSNASQELNGGGSSSLSLEDSTSLKLKGKKSTANRGSATDPQSVYARRRRERINERLRILQHLVPNGTKVDISTMLEEAVKYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNITPTKQP* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1066 353 Gene3D - 270 330 IPR036638 GO:0046983
Gso20g1066 353 PANTHER TRANSCRIPTION FACTOR BHLH54 8 349 - -
Gso20g1066 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 316 IPR011598 GO:0046983
Gso20g1066 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 349 - -
Gso20g1066 353 MobiDBLite consensus disorder prediction 177 274 - -
Gso20g1066 353 MobiDBLite consensus disorder prediction 215 271 - -
Gso20g1066 353 SMART finulus 273 322 IPR011598 GO:0046983
Gso20g1066 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 332 IPR036638 GO:0046983
Gso20g1066 353 Pfam Helix-loop-helix DNA-binding domain 277 317 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1066 Gso-Chr20 40380979 40382837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1066 10 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 38.874 3.84e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g1066 HLH 7.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1066 - - gmx:100817334 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1066 20 40380979 40382837 Gso10g2290 10 49961135 49962929 GST