Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1065 ATGGAACCTGTTCAATTGGTTTCTGAAGAATGGGGTTCTCTTTGTGGATTTCACACAACTGAAGAAGCCGACTTCATGGTTCAGTTGTTTGGTGGTAACACTTCAGTCACTGAAAAGCACAGTGGAAATACCACTTTTGGCTTTTGGCCTGGCCATGAGTCCACAATAGTGGCCATGACAGACACTAATAGCAACTCATACCTTCCTCCAAATTTTACAGATACTAATTTTTTGTGTTTCTCACAAGGGAGTAGCTCCAGCACTGATAATAGTGGTAATAATATCTTTTCCACTACAAGTAGTGGAACCTACTCCTGTGATCCAGAAACAAACTTTGATTCTGTGCCCATGGTTTTGTGCCTTGGAGATGCCAAATTTAGTCCCCATAGTTTTCAATGTGATGACTACTTAAGCCAACAGATAAATGAAAATACTGATGAAGAGTCAAGTCTTGACCCATGGAAATTGGCTATTGCTGACAACAATTTGCAGGCTAAGAGAGAGTATGAAATGATGGTTTCTGAACCTGTAGAGGAAGATAGAAGCAGAAACCTGGAGAACCTACCAAAAAGACTAAAGAGCTCAATAGAGGTCCCAAAAACATCGAGGAATGCTAAATCAAGGAAAAATTCAAAATCTGCTTCAACTAGCAACGATGAAGATGATAGAAGCTTGAGCCTCCAAGTCCAAAGGAATAATAGCTGTTTTTCACAGAGTGACTCTAATGCTTATCTTGAGCCAAATGGAGGGGCATCAAAAGATCCTGCACCTCCTAATTTGCATAGAAAATCAAGAGCAACTACCAGTGCCGCCACTGATCCACAGAGCCTCTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGCTGAGAATACTGCAAAATCTTGTCCCCAACGGAACTAAGGTGGATATCAGCACCATGCTTGAAGAAGCTGTCCAATACGTTAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGAAGATTTGTGGATGTATGCTCCAATTGTTTACAATGGAATAAACATTGGACTAGACCTCGGTATTTCTCCAACCAAAGGAAGATCAATGTGA 1077 0.4048 MEPVQLVSEEWGSLCGFHTTEEADFMVQLFGGNTSVTEKHSGNTTFGFWPGHESTIVAMTDTNSNSYLPPNFTDTNFLCFSQGSSSSTDNSGNNIFSTTSSGTYSCDPETNFDSVPMVLCLGDAKFSPHSFQCDDYLSQQINENTDEESSLDPWKLAIADNNLQAKREYEMMVSEPVEEDRSRNLENLPKRLKSSIEVPKTSRNAKSRKNSKSASTSNDEDDRSLSLQVQRNNSCFSQSDSNAYLEPNGGASKDPAPPNLHRKSRATTSAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDLWMYAPIVYNGINIGLDLGISPTKGRSM* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1065 358 Pfam Helix-loop-helix DNA-binding domain 280 320 IPR011598 GO:0046983
Gso20g1065 358 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 351 - -
Gso20g1065 358 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 7 351 - -
Gso20g1065 358 SMART finulus 276 325 IPR011598 GO:0046983
Gso20g1065 358 MobiDBLite consensus disorder prediction 174 190 - -
Gso20g1065 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Gso20g1065 358 MobiDBLite consensus disorder prediction 237 282 - -
Gso20g1065 358 CDD bHLH_AtIND_like 271 333 - -
Gso20g1065 358 MobiDBLite consensus disorder prediction 174 225 - -
Gso20g1065 358 Gene3D - 273 334 IPR036638 GO:0046983
Gso20g1065 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 336 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1065 Gso-Chr20 40376515 40378523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1065 10 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 37.297 4.90e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g1065 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1065 - - gmx:100816788 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1065 20 40376515 40378523 Gso10g2291 10 49965833 49967900 GST