Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1061 ATGGCTTTGGAGGCTTTGAATTCACCAACAGCAGCCACCACTCCGTTCCGTGGCTACCAAGAAGAGGAGGAGGAGGAGGAGGCTGACCTTCACTTACGTGAGCCTTGGGCTAAAAGGAAACGCTCCAAACGACCGCGTTTTGAGACGGAGGAAGAGTACCTCGCTCTTTGCCTCATCATGCTCGCACAAAGCGGTACCACCAGAAACATCCACAACAACAACACCCAATTACCGTCTTCTTCACTGTCAGACAAAGAAGCGTCGCCGCCGGTGAAACTAACACACAGGTGCACCGTTTGCAACAAGGCCTTTGGTTCTTATCAAGCACTCGGTGGACACAAGGCCAGCCACCGCAAGGCCTCGTCGGAATCCAACCCCACCGCCTCCGTCTCTGCCCTAGCCAACGACAGCGTTTCTGCTTCCACCGTCGGCGGCGGAAGGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCTACCGGTCAGGCCCTGGGTGGCCACAAGCGCTGCCACTACGACGGCGGGAACAACCACAATAACAGCAACGCCAACGGAAACAACAGCAGCGGCGCCACTACCTCCGACGGCGGCGCTGCCTCCTCCTCCCACACGCTCCGTGGGTTTGACCTGAACCTTCCGGCGCCGCTGACGGAGTTCTGGTCGCCGATGGGGTTTGATTTCGGGAAGAAGAAGGTAGGCGGTGAACAAGAGGTGGAAAGCCCGTTGCCGGTAACCGCCAAGAGGCCGCGTTTGTTTACAGGGGAAGATGATGAAACCGCGTAG 783 0.576 MALEALNSPTAATTPFRGYQEEEEEEEADLHLREPWAKRKRSKRPRFETEEEYLALCLIMLAQSGTTRNIHNNNTQLPSSSLSDKEASPPVKLTHRCTVCNKAFGSYQALGGHKASHRKASSESNPTASVSALANDSVSASTVGGGRMHECSICHKSFPTGQALGGHKRCHYDGGNNHNNSNANGNNSSGATTSDGGAASSSHTLRGFDLNLPAPLTEFWSPMGFDFGKKKVGGEQEVESPLPVTAKRPRLFTGEDDETA* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1061 260 MobiDBLite consensus disorder prediction 30 45 - -
Gso20g1061 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 171 IPR013087 -
Gso20g1061 260 MobiDBLite consensus disorder prediction 181 202 - -
Gso20g1061 260 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 2 253 IPR044653 GO:0003700
Gso20g1061 260 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Gso20g1061 260 Pfam C2H2-type zinc finger 95 119 - -
Gso20g1061 260 Pfam C2H2-type zinc finger 149 173 - -
Gso20g1061 260 Gene3D Classic Zinc Finger 93 171 - -
Gso20g1061 260 SUPERFAMILY beta-beta-alpha zinc fingers 95 171 IPR036236 -
Gso20g1061 260 MobiDBLite consensus disorder prediction 1 45 - -
Gso20g1061 260 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Gso20g1061 260 MobiDBLite consensus disorder prediction 230 260 - -
Gso20g1061 260 SMART c2h2final6 149 171 IPR013087 -
Gso20g1061 260 SMART c2h2final6 95 117 IPR013087 -
Gso20g1061 260 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 2 253 - -
Gso20g1061 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1061 Gso-Chr20 40342535 40343705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1061 1 251 C2H2 Transcription Factor Family AT1G27730 43.985 6.92e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g1061 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1061 - - gmx:100819484 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1061 20 40342535 40343705 Gso10g2294 10 50003602 50004906 GST