Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1059 ATGAGCTGCAATGGTTGTCGAGTCCTCAGAAAGGGTTGCAGTGACGACTGCATGCTACGACATTGCCTAGTGTGGATAGAGAACCCACAAGCCCAAGCTCACGCCACCCTCTTCGTCGCCAAGTTCTTCGGCCGTGCCACTCTCATGTCTTTCCTTTCCTCCGTACCCTCCAACCAAAGATCTGCTTTGTTTCAGTCACTGCTTTATGAAGCAGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGCTGTTGTGGACTGGGAACTGGCACCTCTGCCAAATGGGCGTGGAGAAAGTGCTCCGAGGTGGTGCTGCATTGACCCCACTCCCTCAAGTAATAACAAGTGTGGAGAGAGTGATGGTTGGAGGGGAAATAATAATGTGTCACCAGCCCAAGAAGCAACATGTGGGGACACCCCCTGAGGAGGAATCCGAGATCTCCACGTTCGGAAGTAGACCACTGGATTCTGCCCCTCAAAGTCAAACCAACCTCCTTACACTATTCTTCTAA 516 0.5174 MSCNGCRVLRKGCSDDCMLRHCLVWIENPQAQAHATLFVAKFFGRATLMSFLSSVPSNQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEKVLRGGAALTPLPQVITSVERVMVGGEIIMCHQPKKQHVGTPPEEESEISTFGSRPLDSAPQSQTNLLTLFF* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1059 171 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Gso20g1059 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 171 - -
Gso20g1059 171 PANTHER LOB DOMAIN PROTEIN 1 171 - -
Gso20g1059 171 MobiDBLite consensus disorder prediction 133 159 - -
Gso20g1059 171 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1059 Gso-Chr20 40314817 40316626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1059 1 116 AS2 family AT5G67420 71.552 5.38e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso20g1059 LOB 6.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1059 - - gmx:100816269 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1059 20 40314817 40316626 Gso10g2296 10 50026418 50027943 GST
Gso1g1657 1 53209443 53210815 Gso20g1059 20 40314817 40316626 PCT
Gso11g0423 11 3735530 3736814 Gso20g1059 20 40314817 40316626 PCT