Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1050 ATGGGTGATGCACTAAATGAAGTGCAGCACATGGGTGGTGCACCTGCTGCTTCTCCCAAGAGGGACATTACATTGCTTGAGGGAGACAAAGATTTTGAGCTGCACAATGGCATTGAATTTGAATCCCATGAAGCAGCATATTCATTTTATCAGGAATATGCCAAATCTATGGGATTCACCACTTCAATAAAAAATAGCAGACGCTCAAAGAAAACAAAAGAATTTATTGATGCCAAGTTTGCATGCTCTAGGTATGGAGTTACACCTGAGTCTGACAGTGGCAGCAGTCGAAGACCTAGTGTAAAGAAAACAGATTGCAAAGCTTGCATGCATGTGAAGAGAAAGCCAGATGGAAAGTGGATCATTCATGAGTTTATAAAGGAACATAATCATGAACTTGTACCAGCTCTGGCATATCATTTTCGGATTCATAGAAATATGAAATTAGCTGAAAAGAATAATATTGATATCTTGCATGCTGTTAGTGAACGAACCAGAAAGATGTATGTTGAAATGTCTAGGCAATCTAGCAGCTGTCAAAACATTGGGTCTTTCTTGGGTGACATAAACTATCAGTTTGACAGAGGCCAGTATTTGGCTTTGGATGAGGGAGATGCCCAAGTTATGCTTGAGTATTTTAAGCATGTACAAAAGGAGAGTCCCAACTTCTTCTATTCTATAGATTTAAATGAAGAGCAGCGCTTAAGAAATCTATTTTGGATTGATGCAAAAAGTATCAATGATTATCTCAGCTTTAACGATGTAGTTTCATTTGATACCACTTACATAAAGAGCAATGACAAGCTTCCATTTGCACCTTTTGTTGGAGTGAACCACCACTCTCAACCTATATTGCTTGGATGTGCATTGCTTGCAGATGAGACTAAACCAACATTTGTTTGGTTAATGAAGACATGGCTTAGAGCTATGGGTGGGCAAGCTCCCAAAGTTATAATCACTGATCAAGACAAAGCCTTGAAGACTGCAATTGAAGAAGTCTTTCCAAATGTCCGGCATTGTTTTTCTCTTTGGCACATACTGGAGAGCATACCTGAAAATCTCTCTTTTGTGATAAAAAAGCATCAGAACTTCTTGCCAAAATTTAACAAGTGCATTTTTAAATCATGGACAGATGAACAGTTTGACATGAGATGGTGGAAAATGGTCAGTATATGTGAACTGCAAGATGATCTATGGTTTCAGTCACTGTATGAGGACCGGAAAAAATGGGTGCCAACTTACATGGGGGATGCCTTTTTAGCTGGAATGTCTACACCTCAGCGCTCTGAAAGTATGAACTTTTTCTTTGACAAATATATTCATAAGAAAATTACCCTTAAAGAGTTTGTGAAACAATATGGGATAATTCTTCAGAATAGGTATGACGAGGAAGCCATTGCAGATTTTGATACATTGCACAAACAGCCAGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAGTTTATACACATGCAATATTTAAGAAATTTCAAGTTGAAGTTTTGGGTGTAGCTGGCTGTCAATCTAGGATAGAGGCTGGAGATGGCACTATTGCAAAATTTATAGTTCAAGATTACGAGAAGGATGAAGAGTTTTTGGTAACTTGGAATGAGTTGAGCTCAGAGGTCTCTTGCTTTTGTCGATTGTTTGAATATAAAGGTTTCCTTTGCAGGCATGCATTGAGTGTTCTCCAACGTTGTGGTTGTTCTTGTGTTCCATCCCATTATATCTTGAAGAGGTGGACCAAAGATGCCAAAATTAAGGAATTGATGGCAGATAGGACGAGAAGGACACAAACTAGGGTACAACGTTATAATGACTTGTGTAAACGAGCTATTGATTTGAGTGAAAAAGGATCGTTATCTGAAGAGAGTTACAATGTTGTTTTTCGTACACTTGTCGATGCCTTGAAGAACTGTGTACTTGTGAATAATTCTAATAACAATGGTGCAGAAACTAGCAGCAATGCCTATGGCCTTCGTGAAGCAGAAGAAAATCAGGTTCCTCTTGCTTTGAAACCAAATAAAAAGAGGAATGCAGCCAGGAAAAGAAAGGGACAATTAGAGCAGGATGTTATACTTGTTGATGCTCAAGATAGCCTGCAGCAAATGGATAATCTTAGCACAGATGCAATAACCCTTAATGGATATTATGGTACCCAGCAGAATGTGCAAGGACTGCAGGTACAGTTGAACTTAATGGAGCCACCTCAGGATGGTTACTATGTTAATCAACACAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGGTCCAAGCCATGATGGGTTTTTTGGAACACAGCAAGGCATTCATGGGCTGGGAGGGCAGTTGGAATTTCGTCGAGCAGCTACTTTTGGATATAGCCTTCAGGATGAACCTGATCCCCAGTTTCATGGCAACAGTTCGAGAAATACATAG 2430 0.3942 MGDALNEVQHMGGAPAASPKRDITLLEGDKDFELHNGIEFESHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELVPALAYHFRIHRNMKLAEKNNIDILHAVSERTRKMYVEMSRQSSSCQNIGSFLGDINYQFDRGQYLALDEGDAQVMLEYFKHVQKESPNFFYSIDLNEEQRLRNLFWIDAKSINDYLSFNDVVSFDTTYIKSNDKLPFAPFVGVNHHSQPILLGCALLADETKPTFVWLMKTWLRAMGGQAPKVIITDQDKALKTAIEEVFPNVRHCFSLWHILESIPENLSFVIKKHQNFLPKFNKCIFKSWTDEQFDMRWWKMVSICELQDDLWFQSLYEDRKKWVPTYMGDAFLAGMSTPQRSESMNFFFDKYIHKKITLKEFVKQYGIILQNRYDEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRIEAGDGTIAKFIVQDYEKDEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSCVPSHYILKRWTKDAKIKELMADRTRRTQTRVQRYNDLCKRAIDLSEKGSLSEESYNVVFRTLVDALKNCVLVNNSNNNGAETSSNAYGLREAEENQVPLALKPNKKRNAARKRKGQLEQDVILVDAQDSLQQMDNLSTDAITLNGYYGTQQNVQGLQVQLNLMEPPQDGYYVNQHSMQGLGPLNSMGPSHDGFFGTQQGIHGLGGQLEFRRAATFGYSLQDEPDPQFHGNSSRNT* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1050 809 Pfam FAR1 DNA-binding domain 48 135 IPR004330 -
Gso20g1050 809 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 12 724 - -
Gso20g1050 809 MobiDBLite consensus disorder prediction 1 22 - -
Gso20g1050 809 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
Gso20g1050 809 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 724 IPR031052 GO:0006355
Gso20g1050 809 Pfam MULE transposase domain 255 347 IPR018289 -
Gso20g1050 809 Pfam SWIM zinc finger 537 570 IPR007527 GO:0008270
Gso20g1050 809 SMART 26again6 546 573 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1050 Gso-Chr20 40259848 40264788 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso20g1050 MULE 1.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1050 - - gmx:100814153 1620.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1050 20 40259848 40264788 Gso10g2304 10 50078166 50083257 GST