Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1047 ATGACGAGCGCTTCGGAGCTATTTCACTCCAGAAGGCATCGATTGGGACGAAGTGCTCTCGATCTAGGGCTCGACACCGAACTCAACGCCGCCGATTCTCTCCGCCGCCACTACCACCTCCGCCGCCTCCGTCACCACCCGGAGCGTGCATCTGATAGAATTGATGGGAGCTATCGGCGGTCTTTCGCAAGCGAGAGCGTTGATTCTGAAGAAAATGTGAGAAGTAGTCTTAGAGGAAGTGACAGTGAGAGACTACCCGTGGGTGTGGTTCTTGCACGGGCAAGGCTCCTTCAGAGGTTGAGAGGGGAACCTCTATCCACAAACAGGCAATATGATAGAGATTCATTTGGTGAGGATCGAGAAAGTGAATTGTCAAACGAAGATCCAACCAGGGCATCTCTAGTTTCTGACTTGACTTCTCAAATGGCAAGGTCCCAGTTCTTGCAAGAGCTAAACACAAAGCCACCTGGGCTTACTCAAGAGGCCTTGGACTGTTTGCATCAAGAAGTTTTTAGCAGCAGTGGCAATGAGATAGGATTGGAGTCCAGGGTACTGCAGGATTGCAGTATATGCTTGGAGTCATTCACAGATGGAGATGAGCTGATACGTTTGCCATGTGGACATAAGTTTCACTCTGTTTGCTTGGATCCTTGGATTCGCTGCTGTGGAGACTGTCCATACTGTCGAAGAAGTATAGTTGTAATTAACTAA 711 0.4923 MTSASELFHSRRHRLGRSALDLGLDTELNAADSLRRHYHLRRLRHHPERASDRIDGSYRRSFASESVDSEENVRSSLRGSDSERLPVGVVLARARLLQRLRGEPLSTNRQYDRDSFGEDRESELSNEDPTRASLVSDLTSQMARSQFLQELNTKPPGLTQEALDCLHQEVFSSSGNEIGLESRVLQDCSICLESFTDGDELIRLPCGHKFHSVCLDPWIRCCGDCPYCRRSIVVIN* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1047 236 Pfam Ring finger domain 187 229 IPR001841 -
Gso20g1047 236 MobiDBLite consensus disorder prediction 52 78 - -
Gso20g1047 236 MobiDBLite consensus disorder prediction 107 127 - -
Gso20g1047 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 234 IPR013083 -
Gso20g1047 236 PANTHER SI:CH211-59O9.10 1 234 - -
Gso20g1047 236 MobiDBLite consensus disorder prediction 52 79 - -
Gso20g1047 236 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Gso20g1047 236 SMART ring_2 188 228 IPR001841 -
Gso20g1047 236 MobiDBLite consensus disorder prediction 107 131 - -
Gso20g1047 236 CDD RING-H2_PA-TM-RING 187 229 - -
Gso20g1047 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 234 - -
Gso20g1047 236 SUPERFAMILY RING/U-box 187 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1047 Gso-Chr20 40232431 40235277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1047 1 233 C3H Transcription Factor Family AT1G49850 43.295 1.42e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1047 - - gmx:100814695 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1047 20 40232431 40235277 Gso10g2307 10 50099000 50101389 GST