Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1046 ATGCTGCGTTTGTGCTACGGCCCTCTGGATTGCTGCTTCGGACGCCGTGGTGGCCGCGCCGCCGACGGACTTCTCTGGCACACCGACTTGAAGCCCCACGCCTCCGGCGACTTCTCCATCGCCGTCGCCCAGGCGAATTACAGTCTTGAGGATCAGAGCCAAGTCTTCACCTCCCCCTCCGCCACCTACGTCGGCGTCTACGACGGCCACGGCGGCCCCGAAGCTTCCAGATTCGTCAACAAGCGTCTCTTCCCTTATTTGCACAAATTCGCCACTGAGCAAGGGGGTTTGTCAGTGGATGTGATTAAAAAGGCGTTCAGTGCCACAGAGGAGGAATTCTTGCATTTGGTGAAGCTATCCATGCCCATTAGTCCCCAGATTGCTTCCGTCGGATCCTGTTGCCTTTTTGGTGCAATTTCTAATAATGTGTTGTATGTTGCAAACCTTGGAGACTCGAGAGCTGTTCTTGGCAGGAGGGATACAGAGAGAAAGAACAGTCCGGTGGTGGCACAGCGTTTGTCAACTGATCATAATGTAGCTGATGAGGAGGTGAGAAAAGAAGTTGAAGCTCTCCATCCCGATGACTCACACATTGTGGTTTATAGCCGTGGAGTTTGGAGGATTAAGGGCATTATACAGGTGTCAAGATCTATTGGTGATGTGTATTTGAAGAAACCAGATTTCTACCGTGACCTGGGTTTTCAGCAGTTTGGAAATCCTATTCCTTTGAAGCGTTCTGTAATGACAGCTGAACCATCAATCATTATTAGGGAGCTTGAGTCAGAGGATTTATTCTTGATATTTGCATCAGATGGCCTCTGGGAACAATTAAGTGATGAGGCTGCGGTTCAGATCGTTTTCAAACATCCAAGAGCTGGAATTGCCAAGAGACTGGTGAGAGCTGCTCTTCATGAAGCTGCAAAGAAGAGAGAGATGAGATACGATGACATAAAGAAAATTGACAAAGGAATAAGACGACACTTCCATGATGATATCACTGTGGTTGTAATCTATCTTGATCACCATGCAGGCTCCTCTAAGCAAACTGCTGTTGGCTATACAACTGCCCCAGTTGATATTTTTTCCCTAAATGCGGATGGGATGCTTGGTACAGTTGCCTAA 1122 0.4831 MLRLCYGPLDCCFGRRGGRAADGLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKRLFPYLHKFATEQGGLSVDVIKKAFSATEEEFLHLVKLSMPISPQIASVGSCCLFGAISNNVLYVANLGDSRAVLGRRDTERKNSPVVAQRLSTDHNVADEEVRKEVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKKPDFYRDLGFQQFGNPIPLKRSVMTAEPSIIIRELESEDLFLIFASDGLWEQLSDEAAVQIVFKHPRAGIAKRLVRAALHEAAKKREMRYDDIKKIDKGIRRHFHDDITVVVIYLDHHAGSSKQTAVGYTTAPVDIFSLNADGMLGTVA* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1046 373 CDD PP2Cc 50 339 IPR001932 -
Gso20g1046 373 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 367 - -
Gso20g1046 373 SUPERFAMILY PP2C-like 46 341 IPR036457 -
Gso20g1046 373 Pfam Protein phosphatase 2C 58 308 IPR001932 -
Gso20g1046 373 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Gso20g1046 373 PANTHER ALPHABET, ISOFORM E-RELATED 4 367 - -
Gso20g1046 373 SMART PP2C_4 31 337 IPR001932 -
Gso20g1046 373 Gene3D - 28 350 IPR036457 -
Gso20g1046 373 ProSiteProfiles PPM-type phosphatase domain profile. 37 339 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1046 Gso-Chr20 40222282 40225191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1046 22 346 PP2C-type Phosphatase Gene Family AT3G51370 57.658 2.50e-138 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1046 - K01102 gmx:100813810 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1046 20 40222282 40225191 Gso10g2308 10 50110710 50113916 GST
Gso1g1644 1 53104384 53107870 Gso20g1046 20 40222282 40225191 PCT
Gso11g0436 11 3831519 3835516 Gso20g1046 20 40222282 40225191 PCT