Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1011 ATGGCAATTCAGCACCACAATGAACAACTAGAGCATAATGAAAATGTCTCATCTGTCCTTGATGCCCTTTACTGCGATGAAGGAAAGTGGGAGGATGAAGAGGAGGAGGAAGAAGATGATGAAGAAAGTGAAGTAACAACAAACACTGGAACTTCTCTTTTCCCTCTGCTCATGTTGGAGCAAGACTTGTTCTGGGAAGATGAGGAACTAAACTCTCTCTTTTCCAAAGAGAAGGTTCAACATGAAGAAGCCTATGACTATAACAATCTGAACAGTGATGATAATAATAGCAATGATAACAATAATAATAACAATAATGTGCTTTTGGACTCTTGTCTCTCTCAGCCTCGTCGTGAGGCAGTGGAATGGATACTGAAAGTCAATGCTCACTATGGATTCTCTGCTCTCACTGCAACACTGGCCGTTACTTACCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCATGGATGATCCAGCTTGTGGCTGTCACTTGCATCTCTTTGGCTGCAAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTGGACCTTCAAGTGCAAGACACAAAGTATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTCCTGGTGCTGTCCACCCTCAAATGGAAGATGCACCCCGTGACCCCTCTCTCCTTTCTAGATCACATTATAAGAAGGCTTGGATTGAAAACACATCTTCACTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTTTGTCTGTGCTTTTAGATTCAAGATTTGTTGGTTGTCTTCCTTCTGTGTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTAAACACAATGGTGGGATGGAATACAAAAATCAGCTTCTGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAGTGTTATAATGCCATTCTCCAACTCTCAAATGTCAATAATTATGGTCATAACAACAACACTAGCAAGCGCAAGTATGAGCAAATCCCAAGCAGCCCAAGTGGCGTTATTGATGCTGCATTTTGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCATTATATTCACCACCAGAGCCTCTCTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAACCGGGTCATTGTCGGAATTGTTGGCACCTCTCCTTAA 1185 0.4278 MAIQHHNEQLEHNENVSSVLDALYCDEGKWEDEEEEEEDDEESEVTTNTGTSLFPLLMLEQDLFWEDEELNSLFSKEKVQHEEAYDYNNLNSDDNNSNDNNNNNNNVLLDSCLSQPRREAVEWILKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSVLLDSRFVGCLPSVLATATMLHVIDQIKHNGGMEYKNQLLSVLKISKEKVDECYNAILQLSNVNNYGHNNNTSKRKYEQIPSSPSGVIDAAFCSDGSNDSWAVGSSLYSPPEPLFKKSRTQGQQMKLSPLNRVIVGIVGTSP* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1011 394 SUPERFAMILY Cyclin-like 220 330 IPR036915 -
Gso20g1011 394 MobiDBLite consensus disorder prediction 30 45 - -
Gso20g1011 394 Gene3D - 218 309 - -
Gso20g1011 394 Pfam Cyclin, C-terminal domain 219 331 IPR004367 -
Gso20g1011 394 SMART cyclin_7 122 210 IPR013763 -
Gso20g1011 394 Gene3D - 112 217 - -
Gso20g1011 394 CDD CYCLIN 117 209 IPR013763 -
Gso20g1011 394 PANTHER CYCLIN D3.1 PROTEIN 42 370 - -
Gso20g1011 394 PANTHER CYCLINS 42 370 IPR039361 -
Gso20g1011 394 MobiDBLite consensus disorder prediction 30 51 - -
Gso20g1011 394 ProSitePatterns Cyclins signature. 117 148 IPR006671 -
Gso20g1011 394 Pfam Cyclin, N-terminal domain 114 216 IPR006671 -
Gso20g1011 394 SUPERFAMILY Cyclin-like 110 217 IPR036915 -
Gso20g1011 394 SMART Cyclin_C_2 219 348 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1011 Gso-Chr20 39883370 39886042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1011 1 328 Core Cell Cycle Gene Families AT4G34160 54.381 7.21e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1011 K14505 - gmx:547740 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1011 20 39883370 39886042 Gso10g2345 10 50384749 50387037 GST
Gso1g1631 1 52979225 52981407 Gso20g1011 20 39883370 39886042 PCT
Gso11g0451 11 3991134 3993275 Gso20g1011 20 39883370 39886042 PCT