Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1004 ATGTTAGGCTCATTACCTATATTGCCACTCCCTGCTCCTCCCTCTGATGGAAATCTAGGTCCTCTCCCTGAGTCTCAAGTGATTGAGGAGGAGCAGAACAAATCAAATTCTGCTTCTGTTCCGGCGCCGGCAACAGTTGTCACTCACACCAGAACGATTGGAATTATACATCCGCCTCCGGATATTAGGACCATTGTTGATAAAACCTCCCAGTTCGTGGCTAAGAATGGTCCAGAATTTGAAAAGAGGATTATTGCAAATAACACAGGAAATGTCAAGTTCAATTTCTTGAACTCATCAGATCCTTATCATGCATATTATCAACACCGTTTGTCTGAATTTCGTGCTCAGAATCAGTCTTCAGGGCAGCAACCTCCTCCCCAGCCTGCAGACTCGGCTGTTCCTGAATCGGCCCCAGATAGCAACAACGGCGTAGCAGCAGCAGAAAAGCCCGATGTTTCTGCCCAGTTTAAACCTGTCAGGAAAGTACTTGACCCCCCTGAAGCTGAACAGTATACAGTTCGTCTTCCTGAAGGAATCACAGGGGAAGAGCTGGATATTATAAAGCTTACAGCACAATTTGTGGCTCGTAATGGGAAATCTTTTTTGACAGGGTTGACAAGTAGGGAAGTTAATAATCCCCAGTTCCATTTTCTTAAACCGACCCACAGCATGTTTACGTTTTTCACTTCCCTTGCCGATGCATATTCAAAGGTTTTGATGCCACCGAAGGGTTTGACGGAGAAGCTAAAGAAGAGCGTCTCTGATATGACTACTGTCCTTGAAAGGTGTGTGAATAGGCTGGAGTGGGAGCGTTCGCAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAACAGGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTCGTGGTGGTTGAAACAATAGATTTTGCTGATGATGAGGATGAAGAGTTACCTCCTCCAATGACTATTGAGGAGGTTATAAGGAGAAGCAAGGTGACAGCCATGGAAGAAGACATTGTTGAGCCAGGAAAGGAGGTCGAAATGGAAATGGATGTGGAAGAGGCCCAGCTTGTTGAGGAGGGTATGAGAGCTGCTAGTTTGGAAGACCGTGATGATGGAAAGCAGAATGAAGTCAGGGTTACCGAAGACCCTGAACCACCGATGAGAATTGTTAAGAACTGGAAGAGACCAGAGGAGAGGATTTCTGCAGAAAGAGATTCAACCAAGTTTGTTGTTTCTCCCATCACTGGTGAGTTAATTCCTATTAGCGAAATGTCAGAACATATGCGGATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGAATGTTTGCCAAAATTCGAGAGACAACTCTGGCTGCGGATGATGAAATTTCAAGAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATTTTCGGTACTACAGAAGAAGAGGTCTCCAATGCTGTCAAAGCAGAGATTGAGAAGATAAATGATGAGCAACCAAAGCAGGTTATATGGGATGGCCACACTGGTAGTATTGGGCGTACTGCAAACCAAGCCATGTCACAAAATATTGGAAGCGAGGATCAAAATGATGCTTCTAACAATGAAGCCAAGAACCTTCTGGGTCCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAGTTCGTCCTCTGCCACTACCACCCGGACTGGCATTGAATCTTCCTCGTGTTCCTGTCCAATATTCTGCTCCTCATAGTGGTGCCCTTCCAATGCCTCCACCTAGATCCATGATGCCATCTATTCGGCCTGCTCTTCCTCCTCCAATGCCAATGAATACTGGACAGCAGTCAATTATAGCTGGCCAACCACCCCCAATGCATCCATCAATTCCTATGAATAACCATGGAATTCCCATACCCCCACCACCAGGATCTCAGTTCACTCCTGTTCCAGTTCCGCGACCTTATGTTCCTCTTTCTGTTCCACCATCAGTTATGCCTATGATGCATCCACCACCTTTGCCTCAAGGATTGCCACCGCCACCGCCACCAGAGGAGGCTCCTCCTCCACTCCCAGAAGAACCAGAACCAAAGAGGCAGAAACTTGATGATTCTGCTCTGATCCCTGAAGATCAATTTCTGGCTCAACATCCTGGCCCTGTCCGCATCAGTGTATCTGTTCCTAATGTTGATGAAGGAAATCTTAAGGGACAAGTTCTGGAAATTACAGTGCAATCTTTGTCTGAAACTGTTGGTAGTCTGAAGGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAATAAGCAGAAATTGAGTGGAAAGCCTGGCTTTCTCAAGGATAATATGTCACTTGCCCATTACAATGTTGGTGGAGGTGAAACACTTACCCTCACCTTAAGAGAACGTGGTGGTAGAAAGAGATGA 2397 0.4581 MLGSLPILPLPAPPSDGNLGPLPESQVIEEEQNKSNSASVPAPATVVTHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIIANNTGNVKFNFLNSSDPYHAYYQHRLSEFRAQNQSSGQQPPPQPADSAVPESAPDSNNGVAAAEKPDVSAQFKPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVSDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFADDEDEELPPPMTIEEVIRRSKVTAMEEDIVEPGKEVEMEMDVEEAQLVEEGMRAASLEDRDDGKQNEVRVTEDPEPPMRIVKNWKRPEERISAERDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAADDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKINDEQPKQVIWDGHTGSIGRTANQAMSQNIGSEDQNDASNNEAKNLLGPAAPPPRPGMPSVRPLPLPPGLALNLPRVPVQYSAPHSGALPMPPPRSMMPSIRPALPPPMPMNTGQQSIIAGQPPPMHPSIPMNNHGIPIPPPPGSQFTPVPVPRPYVPLSVPPSVMPMMHPPPLPQGLPPPPPPEEAPPPLPEEPEPKRQKLDDSALIPEDQFLAQHPGPVRISVSVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNVGGGETLTLTLRERGGRKR* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1004 798 MobiDBLite consensus disorder prediction 659 692 - -
Gso20g1004 798 PRINTS Proline rich extensin signature 542 558 - -
Gso20g1004 798 PRINTS Proline rich extensin signature 594 615 - -
Gso20g1004 798 PRINTS Proline rich extensin signature 629 645 - -
Gso20g1004 798 PRINTS Proline rich extensin signature 650 667 - -
Gso20g1004 798 PRINTS Proline rich extensin signature 668 693 - -
Gso20g1004 798 Gene3D Surp module 180 238 IPR035967 GO:0003723|GO:0006396
Gso20g1004 798 Coils Coil 271 291 - -
Gso20g1004 798 PANTHER SPLICING FACTOR 3A, PROTEIN 153 798 - -
Gso20g1004 798 PANTHER SPLICING FACTOR 3A, PROTEIN 7 111 - -
Gso20g1004 798 SUPERFAMILY Surp module (SWAP domain) 164 237 IPR035967 GO:0003723|GO:0006396
Gso20g1004 798 MobiDBLite consensus disorder prediction 1 23 - -
Gso20g1004 798 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 7 111 IPR045146 GO:0003723|GO:0045292
Gso20g1004 798 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 153 798 IPR045146 GO:0003723|GO:0045292
Gso20g1004 798 SUPERFAMILY Ubiquitin-like 691 796 IPR029071 -
Gso20g1004 798 MobiDBLite consensus disorder prediction 659 681 - -
Gso20g1004 798 Pfam Surp module 63 114 IPR000061 GO:0003723|GO:0006396
Gso20g1004 798 Pfam Surp module 185 236 IPR000061 GO:0003723|GO:0006396
Gso20g1004 798 CDD Ubl_SF3a120 711 791 IPR035563 -
Gso20g1004 798 SMART ubq_7 719 791 IPR000626 GO:0005515
Gso20g1004 798 MobiDBLite consensus disorder prediction 116 153 - -
Gso20g1004 798 Gene3D - 687 797 - -
Gso20g1004 798 MobiDBLite consensus disorder prediction 521 548 - -
Gso20g1004 798 ProSiteProfiles Ubiquitin domain profile. 739 795 IPR000626 GO:0005515
Gso20g1004 798 ProSiteProfiles SURP motif repeat profile. 65 107 IPR000061 GO:0003723|GO:0006396
Gso20g1004 798 Gene3D Surp module 49 122 IPR035967 GO:0003723|GO:0006396
Gso20g1004 798 ProSiteProfiles SURP motif repeat profile. 187 229 IPR000061 GO:0003723|GO:0006396
Gso20g1004 798 SMART surpneu2 63 116 IPR000061 GO:0003723|GO:0006396
Gso20g1004 798 SMART surpneu2 185 238 IPR000061 GO:0003723|GO:0006396
Gso20g1004 798 Pfam Pre-mRNA splicing factor PRP21 like protein 254 468 IPR022030 -
Gso20g1004 798 SUPERFAMILY Surp module (SWAP domain) 38 118 IPR035967 GO:0003723|GO:0006396
Gso20g1004 798 Pfam Ubiquitin family 726 793 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1004 Gso-Chr20 39806865 39811162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1004 726 795 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.143 7.28e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1004 K12825 - gmx:100797261 1422.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1004 20 39806865 39811162 Gso10g2352 10 50469518 50473282 GST