Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0996 ATGGGGGATCACTTTGAGTTGCTGGTTGATCGATTGCTTACTGAGTCCACATTAGAAGCTGCACTTGAGAGCAGAAATAGGTCAATACTGGCTGCATCCTCTGCGGTGAATGATGCAAAAATTGATCTCAACTTGATGAAGATGGGAGTGGATGATATCAAATTTCTAGGGAAGGTGGTAGAATGCAGGATATGTCATGATGATGATCAAGATTCCAATATGGAGACACCCTGCTCTTGTTGTGGTAGTTTGAAGTACGCCCACCGCAGATGTATACAACGATGGTGTAATGAGAAGGGAGACACCACCTGTGAGATATGCCACCAGCAATTCAAGCCTGGTTATACTGCTCCTCCACCACTATTTCAGTTTGGACGTATTCCAATGAGTTTTAGGGGAAATTGGGAGATTTCAAGAAGAGACTTGAATAGTACTCATTTGGTTAGCATGGTCCCCACTGATCAGAACCTTACCACTTCTAACTATGATCAGTATTCAGCCTCTGCTACTGGAAGTTTGATTTGCTGTCGTTCAATTGCTGTCATTTTCATGGTTCTTCTGATTTTAAGACATACACTTCCCCTTGTAATCAGTGGAAATAAGGAGTATTCTTTCCCACTCTTTTTGCTGTTGTTATTTCGGATTGCGGGAGTTGTTCTTCCTATATACTTCATGGTTAGAGCAGTGGCATTAATCCAGCGGCATCGGAGACAACATCAAGAGCATCTTAATGCCTCGGCCAGTTCGTCTGACGATGAAAGCGAGCAAGCAGATTTGCAGCCTCAGCCTCAGCCTCATGTCATACGTGTACTGTAA 816 0.435 MGDHFELLVDRLLTESTLEAALESRNRSILAASSAVNDAKIDLNLMKMGVDDIKFLGKVVECRICHDDDQDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLTTSNYDQYSASATGSLICCRSIAVIFMVLLILRHTLPLVISGNKEYSFPLFLLLLFRIAGVVLPIYFMVRAVALIQRHRRQHQEHLNASASSSDDESEQADLQPQPQPHVIRVL* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0996 271 MobiDBLite consensus disorder prediction 242 271 - -
Gso20g0996 271 CDD RING_CH-C4HC3_MARCH 62 108 - -
Gso20g0996 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 117 IPR013083 -
Gso20g0996 271 SMART ringv_2 61 108 IPR011016 GO:0008270
Gso20g0996 271 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Gso20g0996 271 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 266 IPR033275 -
Gso20g0996 271 PANTHER OS01G0121200 PROTEIN 1 266 - -
Gso20g0996 271 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Gso20g0996 271 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Gso20g0996 271 SUPERFAMILY RING/U-box 61 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0996 Gso-Chr20 39711487 39715852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0996 61 108 C3H Transcription Factor Family AT2G37950 45.098 1.78e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0996 - - gmx:100794088 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0996 20 39711487 39715852 Gso10g2364 10 50547535 50551262 GST