Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0961 ATGCTCCCTTTTGCTTTGTTGTTTTTTCTTCTTTCCTGCAACTCTCTTGCACCTGTGGTGCATTCTCTGAATGCCGAAGGTTCTGTGCTTTTGACACTAAAGCAGTCCCTTACAGACCCACAAGGATCCATGAGTAACTGGAATTCCTCCGATGAAAACCCTTGTTCATGGAATGGGATCACTTGCAAGGACCAAACTGTTGTGTCCATTAGCATCCCTAAGAGGAAACTCTATGGCTCTCTTACTTCTTCTCTGGGATCTCTCTCCCAGCTCCGCCATGTCAATTTCAGGAACAACAAGCTCTTTGGAAACTTGCCTCCACAGCTCTTTCAGGCTCAGGGACTTCAAAGCTTGGTGCTTTATGGCAATTCACTTTCTGGGTCTGTTCCAAGTGAGATTCAGAACCTCAGGTACCTTCAAGCTCTAGATTTGTCACAAAATTTCTTCAATGGATCGTTGCCTGCTGGAATTGTCCAATGCAAGAGACTCAAAACCCTTGTTCTCAGTAAGAACAATTTCACTGGCCCTTTGCCAGATGGGTTCGGTACTGGTTTGTCTTCTCTGGAAAGACTAGACCTTTCTTTCAATAAGTTCAATGGGTCAATTCCCTGTGACTTGGGAAATCTTTCAAGCCTGCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCAATTCCAGCTAGCCTTGGTAATCTGCCTGAGAAGGTTTACATTGATCTTACTTACAACAGTTTAAATGGTCCAATACCCCAAAATGGTGCTTTGATGAATAGAGGACCAACTGCTTTTATTGGCAATCCTGATCTATGTGGTCCTCCTTTGAAGAATTCATGTGGCTCTGATATTCCATCTGCTAGTTCACCTTCTTCATTTCCATTTATTCCTGATAACTACTCACCTTGGGATGGTAATGGTTCAAGGGGAAGTGAGAAAAACAAAGGGCTAAGTAAGGGAGCTGTGGTTGGCATTGTTGTGGGTGATATAATTGGAATTTGCCTTTTAGGTTTGCTGTTCTCTTTTTGCTACTCAAGGGTTTGTGGTTTTAACCAGGATCTGGATGAGAGTGATGTTAGCAAGGGAAGGAAAGGGAGGAAAGAGTGCTTCTGCTTCAGAAAGGATGACTCTGAGGTTCTATCTGATAATAATGTTGAGCAGTATGATCTTGTCCCATTAGATTCCCATGTGAACTTTGATTTGGATGAGCTTCTCAAGGCTTCAGCTTTTGTTCTGGGTAAGAGTGGAATAGGGATTATGTACAAAGTGGTGCTTGAAGATGGACTTGCTTTGGCTGTGAGAAGATTGGGAGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACAGAGGTTGAAGCAATAGGGAAGTTAAGGCATCCAAATATTGCAACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATATACCCAATGGAAGCCTTGCTACAGCAATTCATGGGAAGGCTGGACTTGACACATTCGCACCACTATCTTGGACCTATAGATTGAAAATCATGAAAGGAACTGCAAAGGGATTGCTCTATCTTCATGAATTTAGTCCCAAAAAATATGTCCATGGAGACCTCAAGCCAAGTAACATACTTCTTGGACACAACATGGAACCCCACATTTCTGACTTTGGAGTTGGGCGCCTTGCAAACATTGCCGGAGGGTCTCCGACCTTGCAATCGAACCGAGTGGCCGCGGAGCAACTACAGGGAAGGCAAAAGAGCATATCCACTGAAGTCACAACCAATGTGTTGGGAAATGGTTATATGGCACCAGAAGCACTGAAAGTGGTGAAGCCATCACAGAAGTGGGATGTGTACTCATATGGTGTGATATTGTTGGAAATGATCACAGGAAGATCATCCATTGTCTTAGTGGGGAACTCAGAAATAGACCTTGTTCAGTGGATTCAGTTGTGCATTGAGGAAAAGAAGCCAGTGTTGGAGGTGTTAGACCCTTACTTGGGTGAAGATGCAGATAAGGAGGAGGAGATTATTGGAGTTTTGAAGATTGCAATGGCTTGTGTTCATAGCAGCCCCGAAAAGAGACCTACTATGAGGCACGTGCTTGATGCTTTGGATAGACTGAGTATTTCCTCTGATTGA 2133 0.4332 MLPFALLFFLLSCNSLAPVVHSLNAEGSVLLTLKQSLTDPQGSMSNWNSSDENPCSWNGITCKDQTVVSISIPKRKLYGSLTSSLGSLSQLRHVNFRNNKLFGNLPPQLFQAQGLQSLVLYGNSLSGSVPSEIQNLRYLQALDLSQNFFNGSLPAGIVQCKRLKTLVLSKNNFTGPLPDGFGTGLSSLERLDLSFNKFNGSIPCDLGNLSSLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTYNSLNGPIPQNGALMNRGPTAFIGNPDLCGPPLKNSCGSDIPSASSPSSFPFIPDNYSPWDGNGSRGSEKNKGLSKGAVVGIVVGDIIGICLLGLLFSFCYSRVCGFNQDLDESDVSKGRKGRKECFCFRKDDSEVLSDNNVEQYDLVPLDSHVNFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLATAIHGKAGLDTFAPLSWTYRLKIMKGTAKGLLYLHEFSPKKYVHGDLKPSNILLGHNMEPHISDFGVGRLANIAGGSPTLQSNRVAAEQLQGRQKSISTEVTTNVLGNGYMAPEALKVVKPSQKWDVYSYGVILLEMITGRSSIVLVGNSEIDLVQWIQLCIEEKKPVLEVLDPYLGEDADKEEEIIGVLKIAMACVHSSPEKRPTMRHVLDALDRLSISSD* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0961 710 Gene3D Phosphorylase Kinase; domain 1 376 481 - -
Gso20g0961 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Gso20g0961 710 SMART serkin_6 411 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0961 710 Gene3D Transferase(Phosphotransferase) domain 1 482 709 - -
Gso20g0961 710 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Gso20g0961 710 Pfam Leucine rich repeat 162 223 IPR001611 GO:0005515
Gso20g0961 710 Pfam Leucine rich repeat 90 147 IPR001611 GO:0005515
Gso20g0961 710 ProSiteProfiles Protein kinase domain profile. 406 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0961 710 SUPERFAMILY Protein kinase-like (PK-like) 411 702 IPR011009 -
Gso20g0961 710 Gene3D Ribonuclease Inhibitor 17 76 IPR032675 -
Gso20g0961 710 Gene3D Ribonuclease Inhibitor 77 283 IPR032675 -
Gso20g0961 710 CDD STKc_IRAK 412 705 - -
Gso20g0961 710 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 709 - -
Gso20g0961 710 SUPERFAMILY L domain-like 25 276 - -
Gso20g0961 710 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 5 709 - -
Gso20g0961 710 Pfam Protein kinase domain 412 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0961 Gso-Chr20 39329271 39332182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0961 1 710 Receptor kinase-like Gene Family AT2G01210 65.603 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso20g0961 Pkinase 3.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0961 - - gmx:100792873 1347.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0961 20 39329271 39332182 Gso10g2398 10 50883566 50886330 GST