Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0953 ATGGTTTTCCAATCCTCAATCTGTCTATACCCATTACATCATTCATCAGATATTTACGAAAATCAGACCCTTCGAGTGTCCAATGCTGCGTTTTCAGTTTCACGGTCAAACACCACCAATTCCAAAGGTTGTCTTCCTGTTCCTCTTACTCATAATCTCACTCTTCCTAGTACCCCCGAGTTCGATATTGCTCCGAATCAATCAAACATGAGATTGTTCTACGGCTGTGAGTCATTATTACCTTGGCCGGAAGAGCACAGAGTTGGGTGTTCTAACGAAACGAGTTCAGTTCTGGCATTCTATAAAGAGGATAAAAATATAAGCTTGGTGTCAAAGAATTGCAGGGGCGAGGTTGTGGATACGATAGTGGAAGATGGAATAATTGAAGGAGGGGTTGAAGAAGCGTTGAGAAAAGGGTTGTTGCTGACGTGGAAGGCCGGTAACTGCAGCGACTGCCACAGCAGTGGAGGGAGGTGCGGCTTCGATTCAATTATGTACACTTTCAGGTGCTTCTGCACTGACAGAGTTCATTCTGCCAAATGTGATCCTGATAATGGTCCAGTTATAAAAAAAGGGTCGAGTTTGAAACTGGTTATAGGTATTGGAATCCCAAGCATGTTGGCAATTGGGTTGCTGTTTCTCTTTCTACTCTACAAACGAAAATATGCTACCTCAGGCGGACAATTGGAGTCAAGAGATTCTTATTCTGATTCCTCCTCAAATCCTCATCGAGAAAGTAGTAGCGAGTACTTTGGAGTTCCACTCTTCTTGTATGAGCAGCTTAAAGAAGCAACAAATAATTTCGACCATACTAAAGAACTTGGTGATGGAGGCTTCGGTACTGTCTACCATGGGAAACTCCCAGATGGACGTGAAGTTGCCGTGAAGCGCTTATACGAGCACAACTGGAAGCGAGTAGAACAGTTCATGAACGAAGTCAAGATCCTCACACGTTTGCGTCACAAATATCTTGTGTCACTCTATGGCTGCACTTCACGGCACAGCCGTGAACTCCTGCTCGTGTATGAATACATTTCAAATGGCACTGTAGCATGTCATCTCCATGGAGAATTAGCGAAGCCTGGCTCGCTACCGTGGTCTATACGAATGAAAATTGCCATAGAGACTGCTAATGCATTGGCTTATCTCCATGCCTCTGACATCATTCACCGTGACGTGAAAACAAACAACATTCTCCTTGACAACAACTTTTGTGTTAAGGTAGCCGATTTTGGGCTTTCAAGAGACTTTCCCAACAATGTCACACATGTCTCCACAGCTCCACAAGGGTCCCCGGGTTACCTTGACCCTGAATATTACAATTGTTATCAGCTTACTAGTAAGAGTGATGTGTATAGTTTTGGAGTTGTGCTTATTGAGCTAATATCATCCAAGCCTGCAGTTGATATGAACAGGAGCAGGGATGAGATTAACTTGTCAAATCTAGCCGTGAGGAAGATTCAAGAAAGTGCAATTAGTGAGCTGGTTGATCCTTCTCTTGGTTTTGATTCAGATAATGGGATTAAGGGGATGATAGTTTCAGTGGCAGGGTTGGCTTTTCAGTGTTTGCAAAGGGAAAAGGACTTGAGACCTTCTATGGATGAAGTGTTGGATGAACTGAGGAGAATTGAGAGTGGGAAGGATGAGGGAGAGGTTCAAGATGAGGGTGATGTTAATGGTGCTGTAGTTTCACATAGTTCTGCACATTCACCACCACCAGCCTCACCTGAGTGGGAAGAAGTTAGATTGTTGAGGAGTATAAAGCCTACTTCCCCAAACACTGTCACTGATAAATGGGAAAGTAAATGTACTACCCCTAATATCAGTGGTTAA 1833 0.4364 MVFQSSICLYPLHHSSDIYENQTLRVSNAAFSVSRSNTTNSKGCLPVPLTHNLTLPSTPEFDIAPNQSNMRLFYGCESLLPWPEEHRVGCSNETSSVLAFYKEDKNISLVSKNCRGEVVDTIVEDGIIEGGVEEALRKGLLLTWKAGNCSDCHSSGGRCGFDSIMYTFRCFCTDRVHSAKCDPDNGPVIKKGSSLKLVIGIGIPSMLAIGLLFLFLLYKRKYATSGGQLESRDSYSDSSSNPHRESSSEYFGVPLFLYEQLKEATNNFDHTKELGDGGFGTVYHGKLPDGREVAVKRLYEHNWKRVEQFMNEVKILTRLRHKYLVSLYGCTSRHSRELLLVYEYISNGTVACHLHGELAKPGSLPWSIRMKIAIETANALAYLHASDIIHRDVKTNNILLDNNFCVKVADFGLSRDFPNNVTHVSTAPQGSPGYLDPEYYNCYQLTSKSDVYSFGVVLIELISSKPAVDMNRSRDEINLSNLAVRKIQESAISELVDPSLGFDSDNGIKGMIVSVAGLAFQCLQREKDLRPSMDEVLDELRRIESGKDEGEVQDEGDVNGAVVSHSSAHSPPPASPEWEEVRLLRSIKPTSPNTVTDKWESKCTTPNISG* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0953 610 ProSiteProfiles Protein kinase domain profile. 268 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0953 610 SUPERFAMILY Protein kinase-like (PK-like) 241 540 IPR011009 -
Gso20g0953 610 Gene3D Transferase(Phosphotransferase) domain 1 345 555 - -
Gso20g0953 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Gso20g0953 610 MobiDBLite consensus disorder prediction 587 610 - -
Gso20g0953 610 Pfam Protein tyrosine and serine/threonine kinase 271 536 IPR001245 GO:0004672|GO:0006468
Gso20g0953 610 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 609 IPR044652 -
Gso20g0953 610 Gene3D Phosphorylase Kinase; domain 1 239 344 - -
Gso20g0953 610 MobiDBLite consensus disorder prediction 228 247 - -
Gso20g0953 610 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 16 609 - -
Gso20g0953 610 MobiDBLite consensus disorder prediction 585 610 - -
Gso20g0953 610 ProSitePatterns Protein kinases ATP-binding region signature. 274 296 IPR017441 GO:0005524
Gso20g0953 610 Pfam Wall-associated receptor kinase C-terminal 95 174 IPR032872 -
Gso20g0953 610 SMART serkin_6 268 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0953 610 MobiDBLite consensus disorder prediction 559 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0953 Gso-Chr20 39232394 39244836 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0953 147 610 Receptor kinase-like Gene Family AT1G25390 54.721 1.18e-166 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso20g0953 PK_Tyr_Ser-Thr 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0953 - - gmx:100792345 1169.45