Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0950 ATGTTCTCCCCTCTCATATTTAAAACACTAATAATATTTTTGTCACAGCTTCTGCTTCTTGTTTCTGCTCAGGATGATGGAAAGTGTCCACCGTCTTTCAACTGTGGATATCTTGGCCTCATTAAGTTTCCTTTCACAACCACAAAGCAACCACACTGCGGCTTATTGGCTATACATGGCTGTGAAGAACACGATCCATACGCTCCCAAAACCGTCAAACTAAGCAATTCAACATCAAGATCTTACACTGTTCTGCAGGTTGAACCTCGTACCATAGGGATCTTAGATGAGAAACAAGATCATTATTTGAAAACCAGAAATTGCACAATCTTCACCGGAGTCAATTTTACTCTTCCTCACACCTCTCCTTTAGCTTCTTTCCACATCAAATATAATATAACTATCTTCAGATGCAATCACTCCCTCAAAATCGTCACCTTTCCCAAATATTTTTATAGATATTCAAACTGTCCTGAATACGATATCTACTATGGCCTTCCAAATACTGAAACTCCTCTGGGCTTCAAGTGGCCCAGCTCTTTGGCACCATGCTCAACCACTCAGCTTGCTGTAGACAAGATATCTACTCGCAATCCCTTTCAATTTCTATCTGGTATTATGATTATTGAAGTACGATTATCTGATGAATGTGAAAGGTGTCTTCTTGATGGAAAAAACCGATGTTTACTTGACAGTAAAGGAAAATTCTATTGCGCCAGAGGGAATAAAAATTTGGCGTGGATACTGGGACTAGGTATTGGACTCCCAGGAATTATTATAATTGGGCTACTGATTATATGGCACTGCAAACCAAGATATGTGTCTGATTTCTATTCAAATCCATACCCCGAGAGTGCGAGTATCTACTCTGGGGTCCCTGTGTTCACCTTTAAGGATCTTGAAATAGCAACAAAATGTTTTGACAGTTCAAGAGAACTAGGAGAAGGAGGCTTTGGTATTGTTTACTATGGTAAGCTTCAGGATGGACGAGAAGTTGCTGTCAAACGCCTATATGAGAACAACTACAGGCGAGTAGAGCAGTTCATGAATGAAATCAAGATCCTCATGAACTTGCGCCACACAAATTTAGTGTCTCTTTATGGCTCCACTTCACGTCACAGCCGTGAACTATTGCTTGTGTATGAATACATTTCAAATGGGACTGTGGCCAGTCATCTCCATCACTATGGATCAACAAATACTGGGTTTTTGCCATGGCCTATTCGAATGAAAGTTGCCATAGAGACTGCTACTGCTTTGGCCTATCTCCATGCTTCTGACATAATTCACCGTGATGTCAAAACAAACAACATTCTCCTTGACAACACTTTTTGTGTTAAAGTTGCAGACTTTGGACTGTCAAGACTGTTCCCCAATGATGTCACACACGTTTCCACAGCTCCCCAAGGAACACCTGGCTATGTTGATCCGGAATATCACAGATGCTACCAGCTTACAAACAAGAGTGATGTGTATAGTTTCGGGGTTGTGCTGATTGAGCTAATATCATCTATGCCACCAATTGATCTGACCAGGCATAAGGATGAAATAAACTTGGCAGATCTAGCCATAAGGAAGATTCAAAAAAGTGCACTTGCAGAGCTGGTGAATCCTTCCCTTGGTTATGATTCAAATAGTGATGTTAAAAGGCAAATAACTTCAGTAGCAGAATTGGCTTTTCAGTGTTTGCAACGGGACAGAGAATTGAGACCCTCCATGGATGAAGTCTTGGAGGTGTTGAGGAGAATTGGGAGTCAGAAGGATGATCTAGAGGAAGTAAAAGTTTACGGTGAAGGTCCATTATCACCATCTTTACCAGATCATGACCAAGTATGTTTATAA 1842 0.4083 MFSPLIFKTLIIFLSQLLLLVSAQDDGKCPPSFNCGYLGLIKFPFTTTKQPHCGLLAIHGCEEHDPYAPKTVKLSNSTSRSYTVLQVEPRTIGILDEKQDHYLKTRNCTIFTGVNFTLPHTSPLASFHIKYNITIFRCNHSLKIVTFPKYFYRYSNCPEYDIYYGLPNTETPLGFKWPSSLAPCSTTQLAVDKISTRNPFQFLSGIMIIEVRLSDECERCLLDGKNRCLLDSKGKFYCARGNKNLAWILGLGIGLPGIIIIGLLIIWHCKPRYVSDFYSNPYPESASIYSGVPVFTFKDLEIATKCFDSSRELGEGGFGIVYYGKLQDGREVAVKRLYENNYRRVEQFMNEIKILMNLRHTNLVSLYGSTSRHSRELLLVYEYISNGTVASHLHHYGSTNTGFLPWPIRMKVAIETATALAYLHASDIIHRDVKTNNILLDNTFCVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYHRCYQLTNKSDVYSFGVVLIELISSMPPIDLTRHKDEINLADLAIRKIQKSALAELVNPSLGYDSNSDVKRQITSVAELAFQCLQRDRELRPSMDEVLEVLRRIGSQKDDLEEVKVYGEGPLSPSLPDHDQVCL* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0950 613 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 1 597 - -
Gso20g0950 613 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 597 IPR044652 -
Gso20g0950 613 ProSiteProfiles Protein kinase domain profile. 307 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0950 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Gso20g0950 613 Gene3D Phosphorylase Kinase; domain 1 282 383 - -
Gso20g0950 613 Pfam Protein kinase domain 308 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0950 613 Gene3D Transferase(Phosphotransferase) domain 1 384 595 - -
Gso20g0950 613 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Gso20g0950 613 SUPERFAMILY Protein kinase-like (PK-like) 280 586 IPR011009 -
Gso20g0950 613 SMART serkin_6 307 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0950 Gso-Chr20 39203154 39205731 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0950 33 613 Receptor kinase-like Gene Family AT1G25390 46.000 1.11e-153 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso20g0950 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0950 - - gmx:100790240 1211.82