Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0949 ATGTCTCCGGCTTATGTACTTTGGTTCCTTTTGTTTTCTTCTCTACCGCTGCTGCTTCTCTCAGAAGGGAATGCAAATGGACACCGTGATGATTGTCCAGACTCATTTGACTGCGGAAGCATAGGGAAAATTTACTTCCCATTCACGACGGTAGAACGCCACAACTGTGGTGTTCTGGCAATCCGTGGCTGTAATGATTCCGGCCAAACATCAGCGAAGCATGTCCAGTTGACCAAAGGAGGAAAACTATTCCAAGTTACGCAAGTTAATAGTCAGAGCCTCAGTACTACTAGTATTTCCATTATCGACCAAGATTTCAGAGGGCTTCTGGAAAATGGTAGTTGTAAGGCCTTGAGCTATAACATTACAGTCCCTCCCTCCTCTGCTTTCGGTTATTTTGATGTGCAAAACAATATTAGCATCTTCAACTGCAGCCGCCATCTACGCAAACTCAACCATACAAATGGCTTCATCAACTATACCAGCACCAGATGTCCTTCCTCTGTTTTTTACTTTGCCCCTCCTGATTCTCAGACCCTGCGCTCTTTTACCTCTTCATGTTCAATGGTTCAACTTCCAAAAAGAATAGATTCTGAGTTCTTCAAAGGCGATCCATTTGGATTTTTAACTGCTGAAATTACTTTTGAATTCAAGTTTTCGGATGACTGTATCCGGTGTTACGAGGAAGGAAAGGGCTTTTGTGAACCAGACAGCAACGGAAAAATTCATTGTGCCTCTCCAACGAGGAAAAGTAGAGTTTTGATTCGGAATCTAGGATTGCTGCTAGCTTGGACCTTGGTGGCTATGGGAGTTGTAGTGATGATCTTGGTTTGCTGCATCAGGACCAAGATTTTCTCTCTCACGTCTCTCTTGTGGTGGAGGGAGACCCCAACCCATCGAATTATTGAGGAGCTTGTGAATGAACATGGACCCCTTCCTACAACTAGGTACAATTATTTAGAGGTTAAGAAAATGACCAATTCTTTTGGAAACAAATTAGGCCAAGGGGGATTTGGTAGTGTTTACAAAGGAAAGTTACAAGATGGACGTCTTGTTGCGGTGAAGATTTTAAGTGAATCAAAAGGCAATGGAGAAGAGTTCATAAATGAAGTTGCTAGTATCAGTAGGACTTCACATGTTAACATTGTTAGACTCTTGGGATTTTGTCTTGATAGTTCTAAACGAGCTCTAATATATGAGTTTATGCCTAATGGATCTCTTGACAAGTTTATATATGAAGAGAAAAATCCATTACAAGTTCCTCACCATTTGAATTGCAAAATATTGTATGATATTGCTATTGGCATTGCTCGTGGATTAGAATACTTACACAGAGGTTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCATAACATATTACTAGATGAGGATTTCTGTCCAAAAATTTCAGATTTTGGACTTGCAAAAATATGCCCAAGAAAAGAAAGCAAAATATCGATATTTGGTGCTCGAGGAACTGCTGGCTATATTGCCCCAGAAGTTTTTTCTAGAAATTTTGGTGAAGTATCACACAAGTCAGATGTTTATAGTTATGGAATGATGGTCTTAGAAATGGTTGGAGGGAGAAAAAATATTAAGACTGAAGTAGACCGTTCAAGTGAAATATATTTTCCTCATTGGATTTATGAGCGTCTTGCATCAAATCAAGAACTTGGTTTACAGAATATAAGAAATGAGAGTGATGATAAAATGACGAGAAAGATGACAATAGTGGGCTTATGGTGCATACAAACTCATCCTTCAACTCGACCAACCATAAGTAAAGTGGTGGAAATGTTAGAAAGTGAAGTTGAGTTCTTGCAAATTCCACCTAAACCTTTTTTGTCTTCTCCTTCAAGCTCTTAG 1872 0.3953 MSPAYVLWFLLFSSLPLLLLSEGNANGHRDDCPDSFDCGSIGKIYFPFTTVERHNCGVLAIRGCNDSGQTSAKHVQLTKGGKLFQVTQVNSQSLSTTSISIIDQDFRGLLENGSCKALSYNITVPPSSAFGYFDVQNNISIFNCSRHLRKLNHTNGFINYTSTRCPSSVFYFAPPDSQTLRSFTSSCSMVQLPKRIDSEFFKGDPFGFLTAEITFEFKFSDDCIRCYEEGKGFCEPDSNGKIHCASPTRKSRVLIRNLGLLLAWTLVAMGVVVMILVCCIRTKIFSLTSLLWWRETPTHRIIEELVNEHGPLPTTRYNYLEVKKMTNSFGNKLGQGGFGSVYKGKLQDGRLVAVKILSESKGNGEEFINEVASISRTSHVNIVRLLGFCLDSSKRALIYEFMPNGSLDKFIYEEKNPLQVPHHLNCKILYDIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDEDFCPKISDFGLAKICPRKESKISIFGARGTAGYIAPEVFSRNFGEVSHKSDVYSYGMMVLEMVGGRKNIKTEVDRSSEIYFPHWIYERLASNQELGLQNIRNESDDKMTRKMTIVGLWCIQTHPSTRPTISKVVEMLESEVEFLQIPPKPFLSSPSSS* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0949 623 SMART serkin_6 327 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0949 623 Pfam Protein kinase domain 330 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0949 623 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 620 - -
Gso20g0949 623 Gene3D Transferase(Phosphotransferase) domain 1 402 615 - -
Gso20g0949 623 ProSiteProfiles Protein kinase domain profile. 327 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0949 623 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Gso20g0949 623 Gene3D Phosphorylase Kinase; domain 1 304 401 - -
Gso20g0949 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Gso20g0949 623 SUPERFAMILY Protein kinase-like (PK-like) 311 603 IPR011009 -
Gso20g0949 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 620 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0949 Gso-Chr20 39195170 39198215 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0949 316 618 Receptor kinase-like Gene Family AT4G18250 61.415 6.27e-127 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso20g0949 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0949 - - gmx:100783861 659.448