Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0947 ATGGTTGTGGTGCTTCTATTTTCTGAGGTGGAAATGTCTCTGGTGTATGTAATCCTTTTGATTTCTTGTGTAATGGTGGTTCTTCTCTCCGCTGGGAATGCTAATGGGCACCATGATGATTGTCCAGACTCATTTGACTGTGGAACTTTGGGGACATTTAGCTTCCCATTCACCACTGTAGAACGCCACAATTGTGGTGTTCTTGCAATCCAAGGCTGTAATGATCCAAACCAAACATCAGTGAAGTATGTCCAGTTGAACAATAAGGGAAAACCATTCCAAGTTACACATGTAAGTAGTCATCGTCGCCGCCCTAGAAGTATTTCCATTATTGATATGGAGTTCAGCAAGCTTCTGGGAAATGGTAGTTGTGCGGTCTTCAACTATAATATTACTGTCCCTCCTTCCTCTCCTATGGGTTATTTTGATTTGCAAAACAATATAAGCACCTTCAATTGCAGCCACCATCAACACAAACTCAACCATACAAATGACTTCATCAACTATACAAATGATTTCATCAACTATACCAGTACCAGATGTCCTTCCTCTGTTTTTTACTTTGCCCCTCCATCCTATGATGATCAGTCCCTGAGCTCTTTAATCTCCTTATGTTCTATGGTTAAACTTCCTGTCAGACAAGATTCTCAGTTCATCAAAAACCCATTTGGATTTTTAAATGCTGAAATTACCTTTGAATTCCAGTTTTCAAGTGAATGTCACCAGTGTTATAATGAAGAAAGAGGAGACCATTGCCGACTTGACAGCAACGGAACTTTTTATTGCGCCAAGAGGAAAACTAGAGTTTCGACTCGGAAGCTAGCATTGATGTTAGGCACCGGCGTAGGACCTTGGATCATATTCGGGTTGTTCCTCACGTTACGCCACTGCAAACGGAAATATGGTCAATCCAGCATCACTAATGCTGATCCCTACCCTAGTCGTGACACAGAGAATGACAGGATCTTCTTTGGGGTACCCATTTTCTCCTACAAGGAACTTCAAGAAGCATCAAACAATTTTGACCCCACTAGAAAACTAGGAGATGGAGGCTTTGGCACTGTTTACTATGGAACACTAAGAGATGGAAGGGAAGTTGCAATCAAGCATCTATTTGAGCACAATTACAAGAGAGTGGAGCAGTTTATGAATGAAATTGAGATCCTTACTCGCCTACGCCACAGAAATCTTGTGTCCCTCTATGGCTGCACTTCACGTCACGGCCAAGAGCTACTGCTTGTATATGAATACGTTCCTAATGGCACAGTTGCTAGCCATCTCCATGGTGATTTAGCAAGGGTTGGTTTGTTGACATGGCCTATTCGAATGCAAATTGCCATAGACACTGCTGCTGCATTGACCTATCTCCATGCTTCAAACATCATCCACCGTGATGTCAAAACCAACAACATTTTACTTGACATTAGTTTTTCGGCTAAGGTAGCAGATTTTGGGCTTTCAAGATTGCTCCCCAATGATGTAAGCCATGTCTCCACAGCTCCACAAGGGTCTCCGGGGTATCTTGACCCTGAATATTTCCAATTCTACAGGCTCACGGACAAGAGTGATGTGTATAGCTTTGGGGTTGTGCTTATTGAGCTGATATCATCCATGCCAGCAGTTGATGCAGCCAGGGAAAGAGATGAAGTTAACTTGGCAAATCTTGCCATGAAAAAGATTCAAAAAGGAAAGCTTAGTGAGCTTGTAGACCCATCCTTGGGGTTTGAGTCAGACCAAGTAGTTAAAAGGATGCTAACTTCAGTAGCAGGGTTGGCCTTTCGGTGTGTGCAAGGAGACAATGAATTAAGGCCTTCTATGGATGAAGTTCTGGAAGCACTCAAGAAATTTCAAAATGGGAATTATGAGTCTGAGAATCTAGAGAAAGGAGATGATGATGGTGTTATCTCTTCCACTTCATCCAGCGAAGTACATCCACCCCAACCAGCTTCACAGCACTCTGGTCAAGTTGGAATTTTAATGAATAATAAGCTACTAACTTCACCGAATTCCTTGACTGAGAAACTGGAAAGTGAATCTAACACGCCCAATGCCAGTGGTTAA 2061 0.4246 MVVVLLFSEVEMSLVYVILLISCVMVVLLSAGNANGHHDDCPDSFDCGTLGTFSFPFTTVERHNCGVLAIQGCNDPNQTSVKYVQLNNKGKPFQVTHVSSHRRRPRSISIIDMEFSKLLGNGSCAVFNYNITVPPSSPMGYFDLQNNISTFNCSHHQHKLNHTNDFINYTNDFINYTSTRCPSSVFYFAPPSYDDQSLSSLISLCSMVKLPVRQDSQFIKNPFGFLNAEITFEFQFSSECHQCYNEERGDHCRLDSNGTFYCAKRKTRVSTRKLALMLGTGVGPWIIFGLFLTLRHCKRKYGQSSITNADPYPSRDTENDRIFFGVPIFSYKELQEASNNFDPTRKLGDGGFGTVYYGTLRDGREVAIKHLFEHNYKRVEQFMNEIEILTRLRHRNLVSLYGCTSRHGQELLLVYEYVPNGTVASHLHGDLARVGLLTWPIRMQIAIDTAAALTYLHASNIIHRDVKTNNILLDISFSAKVADFGLSRLLPNDVSHVSTAPQGSPGYLDPEYFQFYRLTDKSDVYSFGVVLIELISSMPAVDAARERDEVNLANLAMKKIQKGKLSELVDPSLGFESDQVVKRMLTSVAGLAFRCVQGDNELRPSMDEVLEALKKFQNGNYESENLEKGDDDGVISSTSSSEVHPPQPASQHSGQVGILMNNKLLTSPNSLTEKLESESNTPNASG* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0947 686 MobiDBLite consensus disorder prediction 621 686 - -
Gso20g0947 686 MobiDBLite consensus disorder prediction 632 686 - -
Gso20g0947 686 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Gso20g0947 686 Gene3D Phosphorylase Kinase; domain 1 314 417 - -
Gso20g0947 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Gso20g0947 686 SUPERFAMILY Protein kinase-like (PK-like) 324 615 IPR011009 -
Gso20g0947 686 Pfam Protein tyrosine and serine/threonine kinase 344 612 IPR001245 GO:0004672|GO:0006468
Gso20g0947 686 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 685 IPR044652 -
Gso20g0947 686 SMART serkin_6 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0947 686 Gene3D Transferase(Phosphotransferase) domain 1 418 628 - -
Gso20g0947 686 CDD STKc_IRAK 347 616 - -
Gso20g0947 686 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 18 685 - -
Gso20g0947 686 ProSiteProfiles Protein kinase domain profile. 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0947 Gso-Chr20 39165438 39169507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0947 41 686 Receptor kinase-like Gene Family AT1G25390 43.338 1.53e-161 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso20g0947 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0947 - - gmx:100788638 1285.78