Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0942 ATGGCTATAGTTGATTTGTTCTGCTTCCTCTTGTTTTGTCACCTTGTACTCATTCTCTCCGCTGGTTATGGAAATGGGCACCAAGATTGTCCACACTCCTTTACTTGTGGTAATCTTGGAACTTTCCATTACCCTTTCACCAAGGCAGAAAAACCTGACTGTGGCTTGCTAGCCATACATGATTGTGATAATCCTCATCAACACAGAAAAATGATCCAGCTCGAGCTAAATGGAAAAGGCATAGTGCTTATAGGCGTGGCTCAGCAGAATGCGATTTCAATTTTGGATGAAGATTTTCACAAGCGTTTACAACAAAACCCTTGTGGCACTTTGAAGAATAATTATAGTCTTCCTTCCCCTTTTTCTTCTTTGTATTCTATTCACATAAAATTCAATGTAACACTGTTCAAATGCAAACAAAGCCTCAAAATGAAACCGCCAACACATTATTTTAATCACCCGTGCCCTGAATATGATTATGATATATATTATGACAGCCTTCCCACTCCTAATAGTAAGGAGGCGCATAGCCTTTTCTCATCCTGCTCAGTTATTCAGATATCAACAAAAGACTTGACTGATACCAATGACATTCTGTCGTTTGTATCTGCTGAGATGGTTCTTCAAGTAGTATTATCTAATGATTGTGACCAGTGCTATAATCACAGGGGAGGCCAATGTCGGCTTGACGCCAATCAAAAGTTCTACTGTAAAGAAGCTGTTACAATTGCTCTGTTGCTAGTAATGGTAAAGATCTACCATACAAGATGGAAGCAGAAGCAAAATCCGACCAATCAACAGATTAAGATCTTTTTGGAAAGACAGGGACCCCTTCAAACTAAGCGGTATGATTATTCTGAGATAAAGAAAGTGACCAACTCCTTCAGAAACAAATTAGGCCAAGGGGGATTCGGAAGTGTATACAAAGGAAAATTACCAGATGGACGTTATCTTGCGGTGAAGATCCTAAGTGAATTGAAAGATAATGGTGAGGACTTCATCAATGAAGTGGCAACTATCAGCAGAACTTCTCATATCAACATTGTTAATCTTTTGGGGTTCTGTTGTGAAGGTTCTAAACGAGCTTTAGTTTATGAGTTTATGTCTAATGGATCACTTGAGAAGTTTATCTTTGAAGAAAATGTCGGAAAGACGGATCGTCAATTGGACTGTCAAACGATCTACCATATTGCAGTTGGTGTTGCCCGAGGACTGGAATACCTGCATCAAGGTTGCAATACTAGAATTTTACATTTTGACATAAAACCTCATAATATTCTGTTGGATGAGAATTTCAACCCCAAGATTTCTGATTTTGGACTAGCCAAAATTTGCACAAGAAAAGAAAGTATGATATCAATATTTGGCGCCAGAGGAACAGCAGGCTATATTGCCCCAGAAGTTTTTTCCAGAAATTTCGGTGCAGTATCACATAAGTCAGATGTGTACAGCTATGGGATGATGATCTTAGAAATGGCTGGAAGAAGAAAGAATATTAAGACTGAAGTAAATCGCTCGAGTGAAATATACTTTCCCGATTGGATTTACAATTGTCTTGAATCAAATGAAGAGCTTGGTTTACAGAACATAAGAAATGAAAGTGATGACAAATTGGTGAGAAAGATGACAATAGTGGGCTTATGGTGCATACAAACCCACCCTTCCACTCGACCAGCCATAAGTAAAGTGCTGGAAATGCTAGGAAGCAAAGTTGAGTTATTGCAAATTCCACCTAAACCCTTTTTGTCTTCTCCTCCGACCTCTCCTGTCCATTTATCTTATGAGACTTTGTAA 1794 0.388 MAIVDLFCFLLFCHLVLILSAGYGNGHQDCPHSFTCGNLGTFHYPFTKAEKPDCGLLAIHDCDNPHQHRKMIQLELNGKGIVLIGVAQQNAISILDEDFHKRLQQNPCGTLKNNYSLPSPFSSLYSIHIKFNVTLFKCKQSLKMKPPTHYFNHPCPEYDYDIYYDSLPTPNSKEAHSLFSSCSVIQISTKDLTDTNDILSFVSAEMVLQVVLSNDCDQCYNHRGGQCRLDANQKFYCKEAVTIALLLVMVKIYHTRWKQKQNPTNQQIKIFLERQGPLQTKRYDYSEIKKVTNSFRNKLGQGGFGSVYKGKLPDGRYLAVKILSELKDNGEDFINEVATISRTSHINIVNLLGFCCEGSKRALVYEFMSNGSLEKFIFEENVGKTDRQLDCQTIYHIAVGVARGLEYLHQGCNTRILHFDIKPHNILLDENFNPKISDFGLAKICTRKESMISIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMILEMAGRRKNIKTEVNRSSEIYFPDWIYNCLESNEELGLQNIRNESDDKLVRKMTIVGLWCIQTHPSTRPAISKVLEMLGSKVELLQIPPKPFLSSPPTSPVHLSYETL* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0942 597 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 595 - -
Gso20g0942 597 ProSiteProfiles Protein kinase domain profile. 293 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0942 597 Pfam Protein kinase domain 297 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0942 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Gso20g0942 597 Gene3D Transferase(Phosphotransferase) domain 1 368 580 - -
Gso20g0942 597 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Gso20g0942 597 Gene3D Phosphorylase Kinase; domain 1 252 367 - -
Gso20g0942 597 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 595 IPR045874 GO:0004672
Gso20g0942 597 SUPERFAMILY Protein kinase-like (PK-like) 274 567 IPR011009 -
Gso20g0942 597 SMART serkin_6 293 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0942 Gso-Chr20 39112367 39115317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0942 241 582 Receptor kinase-like Gene Family AT4G18250 54.857 5.30e-129 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso20g0942 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0942 - - gmx:100785450 1197.57