Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0941 ATGGCTATAGTTGATTTGTTCTGCTTCCTCTTGTTTTGTCACCTTGTACTCATTCTCTCCGCTGGTTATGGAAATGGGCACCAAGATTGTCCACACTCCTTTACTTGTGGTAATCTTGGAACTTTCAATTACCCTTTCACCAAGGCAGAAAAACCTGACTGTGGCTTGATAGCCATACATGATTGTGATAATCCTCATCAACACAGAAAAATGATCCAGCTCGAGAAAAATGGAAAAAGCATAGTGCTTACAGGCGTGGCTCAGCAGAATGCGATTTCAATTCTGGATGAAGATTTTCACAAGCTTTTACAACAAGACCCTTGTGGCACTTTGAAGAATAATTATAGCCTTCCTTCCCCTTTTTCTTTGTATTCTATTCACATAAAATTCAATGTAACACTGTTCAGATGCAAACACAGCCTCAAAATGAAACCGCCAGCACATTATTTTAATCACTCGTGCCCTGACTATGATTATGATATATACTATGACAGCCTTCCCTCTCCTAATGATAAGGAGGTGCATAGCCTTTTCTCATCCTGCTCAGTTATTCAGATATCATCAAAAGACTTGACTAATACCAATGACATTCTGTCGTTTGTATCTGCTGAGATGGTTCTTCAAGTAGTATTATCTAATGATTGTGACCAGTGCTATAATCGCTGGGGAGGCCAATGTCGGCTTGACGCCAATCAAGAGTTCTACTGTGAAAAAGCTGTTACAGTTGCTCTGTTGCTAGTAATGGTAAAGATCTACCATACAAGATGGAAGAAGCAAAATCCGACCAATCAACAGATTAGGATCTTTTTGGAAAGAGAGGGACCCCTTCAAACTAAGCGGTATGATTATTCTGAGATAAAGAAAGTGACCAACTCCTTCAGAAACAAATTAGGCCAAGGGGGATTCGGAAGTGTATACAAAGGAAAATTACCAGATGGACGTTATCTTGCGGTGAAGATCCTAAGTGAATTGAAAGATAATGGTGAGGACTTCATCAATGAAGTGGCAACTATCAGCAGAACTTCTCATATTAACATTGTTAATCTTTTGGGGTTCTGTTGTGAAGGTTCTAAACGAGCTTTAGTTTATGAGTTTATGTCTAATGGATCACTTGAGAAGTTTATCTTTGAAGAAAATGTCGTAAAGACGGATCGTCAATTGGACTGTCAAACGATCTACCATATTGCAGTTGGTGTTGCCCGAGGACTAGAATACCTGCATCAGGGTTGCAATACTAGAATTTTACATTTTGACATAAAACCTCATAATATTCTGTTGGATGAGAATTTCAACCCCAAGATTTCTGATTTTGGACTAGCCAAAATTTGCACAAGAAAAGAAAGTATGATATCAATATTTGGCGCCAGAGGAACAGCAGGCTATATTGCCCCAGAAGTTTTTTCCAGAAATTTCGGTGCAGTATCACATAAGTCAGATGTGTACAGCTATGGGATGATGATCTTAGAAATGGTTGGAAGAAGAAAGAATATTAAGACTGAAGTAAATCGCTCGAGTGAAATATACTTTCCCGATTGGATTTACAATTGTCTTGAATCAAATCAAGAGCTTGGTTTACAGAACATAAGAAATGAAAGTGATGACAAATTGGTGAGAAAGATGACAATAGTGGGCTTATGGTGCATACAAACCCACCCTTCCACTCGACCAGCCATAAGTAAAGTGCTGGAAATGCTAGGAAGCAAAGTTGAGTTATTGCAAATTCCACCTAAACCCTTTTTGTCTTCTCCTCCGACCTCTCCAGTCCATTTATCTTATGAGACTTTGTAA 1788 0.3887 MAIVDLFCFLLFCHLVLILSAGYGNGHQDCPHSFTCGNLGTFNYPFTKAEKPDCGLIAIHDCDNPHQHRKMIQLEKNGKSIVLTGVAQQNAISILDEDFHKLLQQDPCGTLKNNYSLPSPFSLYSIHIKFNVTLFRCKHSLKMKPPAHYFNHSCPDYDYDIYYDSLPSPNDKEVHSLFSSCSVIQISSKDLTNTNDILSFVSAEMVLQVVLSNDCDQCYNRWGGQCRLDANQEFYCEKAVTVALLLVMVKIYHTRWKKQNPTNQQIRIFLEREGPLQTKRYDYSEIKKVTNSFRNKLGQGGFGSVYKGKLPDGRYLAVKILSELKDNGEDFINEVATISRTSHINIVNLLGFCCEGSKRALVYEFMSNGSLEKFIFEENVVKTDRQLDCQTIYHIAVGVARGLEYLHQGCNTRILHFDIKPHNILLDENFNPKISDFGLAKICTRKESMISIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMILEMVGRRKNIKTEVNRSSEIYFPDWIYNCLESNQELGLQNIRNESDDKLVRKMTIVGLWCIQTHPSTRPAISKVLEMLGSKVELLQIPPKPFLSSPPTSPVHLSYETL* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0941 595 Gene3D Phosphorylase Kinase; domain 1 251 365 - -
Gso20g0941 595 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 593 - -
Gso20g0941 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Gso20g0941 595 ProSiteProfiles Protein kinase domain profile. 291 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0941 595 Pfam Protein kinase domain 295 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0941 595 Gene3D Transferase(Phosphotransferase) domain 1 366 578 - -
Gso20g0941 595 SUPERFAMILY Protein kinase-like (PK-like) 273 565 IPR011009 -
Gso20g0941 595 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 593 IPR045874 GO:0004672
Gso20g0941 595 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Gso20g0941 595 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0941 Gso-Chr20 39096770 39099682 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0941 240 580 Receptor kinase-like Gene Family AT4G18250 54.441 1.83e-127 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso20g0941 Pkinase 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0941 - - gmx:100784387 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0941 20 39096770 39099682 Gso10g2408 10 50996806 51001317 GST