Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0939 ATGAGTTCAGTTTATGAATTAGTATTATTGCTTTTATTTTGTGGCCTTATGCCACTTGTCTTGGCGGCTGGGAACCAAGCAGAGTGTCCACCTTCGTTTCCATGTGGATATCTTGACAATATCAGTTTCCCATTCACTCTAACTGAACGCCCCGACTGTGGCTTATTGCCCATTAGCAATTGTGATGATCTACTTAAGCCCAAAATGATCCAATTACACAAAAAGGGAGTATCGTTTCAGCTTGTACGTGTTGCTCAGCTTTTCAGTAGTCCTACTACTCCTCTCACAACTTTTCAATTTAGAGACACAAATCTCTATGACCTTCTGCAGAACGAAAGTTGTGAAGCTTTCAGAAACAATTATACTCTTCCTTTTCCTCACAGCTTTCACTTTGCTTCTTTTCATCTCCAATACAACACAACTCTGTTCAGGTGCAACCGCAGCCTCCATGTCAGCCCTCCCACAAGCATGCATAATTATACAAAGTGCGCTGATTACGATCTCTACTACAATAACACCTCCTACAATAACATCTCCAGAGCTGCAGATGCGTCTTTGAGAGCATGTACAAAGGTCCTGCTTCCAATTAAAGACGCGCCTGACGCTAACAACCCATTCACATTCGCAACTGCAGATATCTTGACTAAAGTAGAATTAACTGGTGAATGTGCAGATTGCCACTATCGCAGAGGAGGGCAGTGTCAACTTGACAGCAGAGAGATATTTTTTTGTGCCACTGCCAATAGTACCTTTACGATAATAGGCCTTGTAGTAGTGGTGGCATTAGTAGCTGTAGTTCTGCTGATGGTCTTGGCTTGCAGCTTTAGAAAAAAGATCTTTTGCATGGAGAATCCAACCCATCGGATAATTGAAGGGTTTTTGAAGGAACATGGACCCCTTCCTACAACTAGGTACAGTTATTCAGAGGTTAAGAAAATGACCAATTCTTTTAGAAACAAATTAGGCCAAGGGGGATTTGGTAGTGTATACAAAGGGAAGTTACATGATGGTCAAGTTGTTGCGGTGAAGATTTTAAATAAATCAGAGGGCAACGGAGAAGAATTCTTCAATGAAGTTGCAAGTATTAGTAAGACTTCACATGTTAACATTGTTAGACTTTTGGGATTTTGTTTAGATAGTTCTAAACAGGCTCTAATATACGAGTTTATGCCTAATGGATCTCTTGACAAGTTTATATATGAAGAGAAAAATCCACCAGGGGTTGCTCGCCAATTGGATTGCAAACTATTGTATGATATTGCAATTGGCATTGCTCGTGGATTAGAGTACTTACACAGAGGTTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCACAACATACTACTAGATGAGGATTTCAGCCCAAAAATTTCAGATTTTGGACTTGCAAAACTATGTCCGAGAAAAGAAAGTGTCGTATCAATATTGGGTGCAAGGGGAACCGCAGGTTATATTGCTCCAGAAGTTTTTTCCAGGAATTTTGGTGCAGTATCTCATAAGTCAGATGTCTACAGTTATGGGATAATGGTCCTAGAAATGGTCGGAATGAGATATAATTCTAAGGCTGAAGTAAACTGCTCGAGTGAAATATATTTTCCTCATTGGATTTACACTCATCTTGAATCAGATCAGGAACTTGGTTTACAAAATATAAGAAATGAAAGTGATGACAAAATGGTGAGAAAGATGACAATAGTGGGCTTATGGTGTATACAAACTTACCCTCCAACTCGACCAGCCATAAGTAGAGTGGTGGAAATGCTAGAAAGTGAAGTTGAGTTATTGCAAATTCCACCTAAACCTACTTTTTCTTCTTCTGCAACCCCTCCAGCCCATTTTTCAAGTGAGACAAATGATAATGTAATTAATGAGAATACTAGTGTGTAG 1893 0.3951 MSSVYELVLLLLFCGLMPLVLAAGNQAECPPSFPCGYLDNISFPFTLTERPDCGLLPISNCDDLLKPKMIQLHKKGVSFQLVRVAQLFSSPTTPLTTFQFRDTNLYDLLQNESCEAFRNNYTLPFPHSFHFASFHLQYNTTLFRCNRSLHVSPPTSMHNYTKCADYDLYYNNTSYNNISRAADASLRACTKVLLPIKDAPDANNPFTFATADILTKVELTGECADCHYRRGGQCQLDSREIFFCATANSTFTIIGLVVVVALVAVVLLMVLACSFRKKIFCMENPTHRIIEGFLKEHGPLPTTRYSYSEVKKMTNSFRNKLGQGGFGSVYKGKLHDGQVVAVKILNKSEGNGEEFFNEVASISKTSHVNIVRLLGFCLDSSKQALIYEFMPNGSLDKFIYEEKNPPGVARQLDCKLLYDIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDEDFSPKISDFGLAKLCPRKESVVSILGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGIMVLEMVGMRYNSKAEVNCSSEIYFPHWIYTHLESDQELGLQNIRNESDDKMVRKMTIVGLWCIQTYPPTRPAISRVVEMLESEVELLQIPPKPTFSSSATPPAHFSSETNDNVINENTSV* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0939 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Gso20g0939 630 SMART serkin_6 315 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0939 630 ProSiteProfiles Protein kinase domain profile. 315 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0939 630 SUPERFAMILY Protein kinase-like (PK-like) 298 591 IPR011009 -
Gso20g0939 630 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 618 IPR045874 GO:0004672
Gso20g0939 630 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Gso20g0939 630 MobiDBLite consensus disorder prediction 601 630 - -
Gso20g0939 630 Pfam Protein kinase domain 319 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0939 630 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 618 - -
Gso20g0939 630 Gene3D Transferase(Phosphotransferase) domain 1 390 598 - -
Gso20g0939 630 Gene3D Phosphorylase Kinase; domain 1 295 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0939 Gso-Chr20 39076260 39078966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0939 226 623 Receptor kinase-like Gene Family AT1G66910 46.650 7.45e-125 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso20g0939 Pkinase 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0939 - - gmx:100783861 1177.93