Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0938 ATGGCAGGAGCAAAACTCTCTCGCCTCGTTGCTGTTCTCCATTTTCTTATTCTTCTCATGGTTCAAGGTTTTAGTAACCCAGATTTCGACGCCCTTGTGGCCTTCAAAACCGCCTCAGACACTTCCCAAAAGCTCACAGCATGGAACCTTAACAGCACCACCAACAACAACCCATGTTCCTGGAGCGGCGTGTCGTGCATTCGCGATCGAGTCTCCCGACTCGTTCTCGAAAACCTTGACCTCGAAGGTTCCATTCATCCCTTAACCTCTCTGACTCAGCTCCGAGTTCTGAGTCTCAAAGGAAACCGTTTCTCCGGTCCCCTTCCCAACCTCTCCAACCTCACTGCTCTAAAACTCCTCTTCTTATCACGCAATTCCTTCTCCGGCGAGTTTCCGGCGACCGTCACGTCGCTCTTCCGCCTCTACCGTCTTGATCTTTCCAACAACAACTTCTCCGGCGAGATTCCTGCGAAGGTCGGCCACTTGACCCACCTTTTCACTCTCCGTCTCGACGGTAACAAGTTCTCCGGCCACATTCCCGACTTGAACCTCCCCGAACTCCAAGAGTTCAACGTCTCCAGCAACCGCTTCTCCGGCGAGATACCCAAGTCCTTGTCAAAATTCCCCGAACCCTCGTTCGGGCAAAACCCGTTTCTCTGCGGAGCCCCAATTAAAAACTGTGCACCCGACCCTACAAAGCCCGGATCCGAAAGCGCGATTGCGTCACTATTGATACCACCAAACAACAACCCAACAACCAGTGTATCATCTTCGCCAAGTCCAATGCCAAAAACACCAACATCGACATCAACAAGTAGTAATAAAAGCCACGAAAAGGGTGCTTCGAAGATAAGTCCGGTGGTGCTTATAGCTATTATTACGGGTGGCGTTTTGGTTCTAATTGCAATAGCGTTTTTGCTTCTGTGTTGCTACTTCTGGAGGAACTATAAGTTGAAGGGGAGGAAAGGATCGAAGGTTTTCGATAGTGAGAAGATTGTGTGCTCGTCGAGTCCGTTCCCTGATCAGGGAGGGTTGGAGAGGAATCGAATGGTGTTCTTCGAAGGTGAGAAAAGGTATGAAATTGAGGACTTGCTGGAATCCCCTTCGGAAATGCTTGGGACGGGTTGGTTTGGGACTACGTACAAGGCAGAGCTCGATGGTGTGAACGTGTTTGCAGTCAAGGGACTCGGTGGCACATACATGACAGGGAAGAGAGAGTTCGAACAACACATGGAAGTGTTGGGAAGGTTGAGACATCCCAATGTTGTTAGTTTGAGAGCTTACTATTTCACGAGCGAGATAAAGTTGTTGGTCTATGATTACGAGTCCAATCCCAACTTGTTCCAGCGCCTTCACGGATTGGGACGAATCCCACTGGACTGGACCAATAGGCTCAAGATAGCAGCGGGAGCGGCGCGAGGCGTGGCTTTCATTCATAACTCGTGCCAGTCCCTTAGGCTCATCCACGGTTACATCAAATCCACCAACGTCCAACTCGACAAGCAGGGGAATGCACGCATGTCTGATTTTGGGCTCTCCGTGTTCGCGCGCCCAGGCCCAGTGGGTGGCAGATGCAACGGCTACCTCGCGCCGGAGGCATCGGAGGATGGAAAACAGACGCAGGAATCTGATGTGTACTCTTTTGGTGTGCTCCTGCTGGAGCTGCTGACAGGGAAGTTCCCCGCCAAGGTGAAGACTGAAGAGGTTGGTTTCGGTGGGTTGCTGGACATTCCGATGTGGGTCCGGTCAGTGCCGAGGAAGAGGTGGACCCTTGACGTGTTTGATTGGGACCTGATGAGGCATAAGGATATTGAGGAGGAGATGGTGGGGCTGCTTCAGATTGCGATGACGTGTACCGCGGCTGCACCTGATCAACGGCCCACCATGACCCACGTCGTCAAGATGATCGAGGAGTTGCGTGGGGTCGAGGTGTCGCCGTGTCATCACTAG 1950 0.521 MAGAKLSRLVAVLHFLILLMVQGFSNPDFDALVAFKTASDTSQKLTAWNLNSTTNNNPCSWSGVSCIRDRVSRLVLENLDLEGSIHPLTSLTQLRVLSLKGNRFSGPLPNLSNLTALKLLFLSRNSFSGEFPATVTSLFRLYRLDLSNNNFSGEIPAKVGHLTHLFTLRLDGNKFSGHIPDLNLPELQEFNVSSNRFSGEIPKSLSKFPEPSFGQNPFLCGAPIKNCAPDPTKPGSESAIASLLIPPNNNPTTSVSSSPSPMPKTPTSTSTSSNKSHEKGASKISPVVLIAIITGGVLVLIAIAFLLLCCYFWRNYKLKGRKGSKVFDSEKIVCSSSPFPDQGGLERNRMVFFEGEKRYEIEDLLESPSEMLGTGWFGTTYKAELDGVNVFAVKGLGGTYMTGKREFEQHMEVLGRLRHPNVVSLRAYYFTSEIKLLVYDYESNPNLFQRLHGLGRIPLDWTNRLKIAAGAARGVAFIHNSCQSLRLIHGYIKSTNVQLDKQGNARMSDFGLSVFARPGPVGGRCNGYLAPEASEDGKQTQESDVYSFGVLLLELLTGKFPAKVKTEEVGFGGLLDIPMWVRSVPRKRWTLDVFDWDLMRHKDIEEEMVGLLQIAMTCTAAAPDQRPTMTHVVKMIEELRGVEVSPCHH* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0938 649 MobiDBLite consensus disorder prediction 250 279 - -
Gso20g0938 649 Gene3D Ribonuclease Inhibitor 90 233 IPR032675 -
Gso20g0938 649 Gene3D Ribonuclease Inhibitor 23 89 IPR032675 -
Gso20g0938 649 SUPERFAMILY L domain-like 52 224 - -
Gso20g0938 649 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Gso20g0938 649 Gene3D Transferase(Phosphotransferase) domain 1 443 645 - -
Gso20g0938 649 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 9 640 - -
Gso20g0938 649 Gene3D Phosphorylase Kinase; domain 1 352 441 - -
Gso20g0938 649 Pfam Protein tyrosine and serine/threonine kinase 370 635 IPR001245 GO:0004672|GO:0006468
Gso20g0938 649 ProSiteProfiles Protein kinase domain profile. 366 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0938 649 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 640 - -
Gso20g0938 649 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524
Gso20g0938 649 SUPERFAMILY Protein kinase-like (PK-like) 369 636 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0938 Gso-Chr20 39067532 39070368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0938 28 648 Receptor kinase-like Gene Family AT1G68400 57.812 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso20g0938 PK_Tyr_Ser-Thr 2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0938 - - gmx:100783323 1230.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0938 20 39067532 39070368 Gso10g2409 10 51012954 51016039 GST