Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0928 ATGTCCACAATTGCAAAGAGAGATTTGAGTTGTAATGAAGAAGAGAGTGAGCTGAGAAGAGGTCCTTGGACTCTTGAAGAAGACAGCTTACTTATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGTTGCAGACTCAGATGGCTGAATTATTTGAAACCAGACATTAAGAGAGGGAACCTCACTCCACAGGAGCAACTCTTGATCCTCGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGACAATGAGATCAAGAACTATTGGAGAACAAGGGTACAGAAACAGGCACGCCAGCTTAACATTGAGTCTGGTAGCAAGAGATTCATTGATGCTGTCAAGTGTTTTTGGATGCCAAGATTGCTCCAAAAGATGGAACAGAGCAATTCTCCAAGCCCTCACTCTTCCATGACAACCATGATGAATTTAGGGAATTCTGGAGAAGCTTCTATGAGTTCAATGTCAAGCAGCTTCAATATTAATCCTTCTATGTCTTCTTCATCATCTCCCCCGCAAAGGAAATTTATTATGGATGATGCTAATCATTTTAGTACTATGTCCAACCCCATCAATCCATCCCCAGATTCCTTCCAATTTTCACAGCCACTAGAAATTTCTGAACACCCCAAAAGTCCTCCCAATGTGTTTGAGAACAATGTTTGCAGCTATCCAATCCAGGACAATTGCTATCTTGATACCAATAACTATGGCATGGAAGGCATAAACATGGATCCCCTTTCAGCAATGGATACTTATGACTTCTCACAGTTTGATTTTCAGACTGCAGGGAATGGATGGATGCTAGACAGCATGGGGGATTCCACTTTATGGAACATGGATGCTATGTGA 924 0.421 MSTIAKRDLSCNEEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQSNSPSPHSSMTTMMNLGNSGEASMSSMSSSFNINPSMSSSSSPPQRKFIMDDANHFSTMSNPINPSPDSFQFSQPLEISEHPKSPPNVFENNVCSYPIQDNCYLDTNNYGMEGINMDPLSAMDTYDFSQFDFQTAGNGWMLDSMGDSTLWNMDAM* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0928 307 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 35 44 IPR001345 GO:0003824
Gso20g0928 307 SMART sant 19 69 IPR001005 -
Gso20g0928 307 SMART sant 72 120 IPR001005 -
Gso20g0928 307 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Gso20g0928 307 MobiDBLite consensus disorder prediction 172 196 - -
Gso20g0928 307 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 9 305 - -
Gso20g0928 307 CDD SANT 77 116 IPR001005 -
Gso20g0928 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Gso20g0928 307 Gene3D - 76 118 - -
Gso20g0928 307 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Gso20g0928 307 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Gso20g0928 307 CDD SANT 22 67 IPR001005 -
Gso20g0928 307 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Gso20g0928 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Gso20g0928 307 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Gso20g0928 307 Gene3D - 17 73 - -
Gso20g0928 307 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 305 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0928 Gso-Chr20 38934504 38936254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0928 15 282 MYB Transcription Factor Family AT1G68320 52.518 9.63e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g0928 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0928 K09422 - gmx:100775834 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0928 20 38934504 38936254 Gso10g2419 10 51143777 51145281 GST