Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0920 ATGAGACCAGAACGAAACCCCTTAGATCTTAACAATTTGCCCGATGAGTACTCTAGAGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCATCCGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACGCTGAACCAGGCTCGTCAACTGGTCTTTCGTTGTGATCATAACATTGCTGCACAAGGTGCCCCTCACTTAGGATGCTGCCAAACAATAGGAACGGGGGGTTATCATCCCTCAGGAGACCCAACAGTGCCTCTAAGATTCCCAAGATACTTCTCAGGTTCATCCTCAACTCACATGCCACCATCCCCGCCACCGCCGCCGCCACCGCAACGACCATACCTATACCCTTCACCTACGAGGCCAGTGTCATTTGGGTCATCACACTTCCCTCTCCAGCATGCAGTGAACGATTACTATGTGGGCCACGTGATGAGTGGTGGCAGCCACGGACACTATGTTGGAGGAGAGAGCACAAGGAGTTACACGTGCATTGGTGCACCGGTGGGGCAAGGTGGCGGATTCGCTGGTGGTAAGGAGGGGTCTGCAGTGCAGGAGGAAGGGTTGAGTACTTGGGGAAGGGGCTATTCAGGTGCACAAGATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 771 0.5279 MRPERNPLDLNNLPDEYSRDGKQVLEDHTSSSGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRCDHNIAAQGAPHLGCCQTIGTGGYHPSGDPTVPLRFPRYFSGSSSTHMPPSPPPPPPPQRPYLYPSPTRPVSFGSSHFPLQHAVNDYYVGHVMSGGSHGHYVGGESTRSYTCIGAPVGQGGGFAGGKEGSAVQEEGLSTWGRGYSGAQDRLDPPSAINRFQDGF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0920 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Gso20g0920 256 MobiDBLite consensus disorder prediction 1 46 - -
Gso20g0920 256 MobiDBLite consensus disorder prediction 119 160 - -
Gso20g0920 256 MobiDBLite consensus disorder prediction 139 157 - -
Gso20g0920 256 MobiDBLite consensus disorder prediction 15 46 - -
Gso20g0920 256 Gene3D Classic Zinc Finger 28 102 - -
Gso20g0920 256 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Gso20g0920 256 PANTHER ZINC FINGER PROTEIN JAGGED 1 221 IPR045320 GO:0003700
Gso20g0920 256 PANTHER ZINC FINGER PROTEIN JAGGED 1 221 IPR031113 GO:0007275
Gso20g0920 256 SUPERFAMILY beta-beta-alpha zinc fingers 50 80 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0920 Gso-Chr20 38797819 38800244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0920 4 216 C2H2 Transcription Factor Family AT1G13400 43.750 3.14e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g0920 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0920 20 38797819 38800244 Gso10g2425 10 51241366 51243927 GST