Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0915 ATGAGTTCGGCTACTAAGAACGCAGCAAACGCGGTTGGGGGAAAAACTGCAAGAGCATGTGACGGCTGCATAACGAAACGTGCACGTTGGTACTGTGCTGCCGATGATGCTTTTCTCTGCCAGGCTTGTGACTCTTCGGTTCACTTGGCGAATCCTTTGGCTCGAAGACACGAACGAGTCCGCTTGAAAACCGCGTCGTACAAGTCCACCGATGAACGACGACAACCTCCCACGTGGCACACCAAGAAACCTCGAACGCCCAGACATGGGAAACATTCTCGTAACAACAACCCTTTCCACTTGGTCCCTGAAGAGGGTTCCGAAGAGGCGAATTCCCATGATGAGAATGAGGAGCAGCTCGTTTATAGGGTCCCCATAGTCGACCCTTTTGTTGCTGAGCTATGTGGGACTAATAGTTCTCCTTCTTCTGTTACTTCAACTGATCAAGGGGTAGTAGCTGCTGCTGCTGCTTCTGCTGAGGTTGAATACAAAGGGATTCAAAGCAATGATTTTTGTAGCAATAGCAATGAGATCGAAAACTTGCATGGGATGCTTCCTTCGGATGCAGAACTTGCTGAGTTTGCTGCTGATGTTGAGAGCTTTTTGGGTAGGGGGCTTGAAAACAAGTGCGTGGGGATGGAAGAATTGGGACTCGTTGATACCAAAGAAGAGGAGTGTTCGGTGGGTAGTGGGAAGGTGAAGGTGGAAGAGGAAGAGAGCCCTCTGATGGAGATGGATATGGGAAGAGATGATCAATCATTTGAGTTGAGCTTTGATTATGAGACGTGTGAAGAGGTAAAGGAGATGAAGGTTAGTGATTTGGAATTGGGGAATGAGTTAGGAGAGATGAAAGAGAATGATGATGATGAGGTGAAAAGGAAGAAGGTATCGTTGCAGCTTGATTATGAGGCGATAATCATCGCCTGGGCTAGCCAAAAGTCTCCGTGGACCACTGCTGACAAACAAAACTTGGACCCTGATGAGTGCTGGCACCAATGCATGGGAAGTTGCGGAACGGCATTTCATCACCCTTACGGTGAACTGGGTGGATTTGGGATTCATTCAGTGATAGTAGACGGGGGCAGAGAGGCAAGGGTGTCAAGATACAGAGAGAAGCGCCGAACTAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTTAAGAGGGCTTCCTTTGCACCACCAACATTTCCTTTGCTAAATAAATAA 1254 0.4777 MSSATKNAANAVGGKTARACDGCITKRARWYCAADDAFLCQACDSSVHLANPLARRHERVRLKTASYKSTDERRQPPTWHTKKPRTPRHGKHSRNNNPFHLVPEEGSEEANSHDENEEQLVYRVPIVDPFVAELCGTNSSPSSVTSTDQGVVAAAAASAEVEYKGIQSNDFCSNSNEIENLHGMLPSDAELAEFAADVESFLGRGLENKCVGMEELGLVDTKEEECSVGSGKVKVEEEESPLMEMDMGRDDQSFELSFDYETCEEVKEMKVSDLELGNELGEMKENDDDEVKRKKVSLQLDYEAIIIAWASQKSPWTTADKQNLDPDECWHQCMGSCGTAFHHPYGELGGFGIHSVIVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAPPTFPLLNK* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0915 417 Pfam CCT motif 362 404 IPR010402 GO:0005515
Gso20g0915 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 410 - -
Gso20g0915 417 MobiDBLite consensus disorder prediction 80 95 - -
Gso20g0915 417 MobiDBLite consensus disorder prediction 62 79 - -
Gso20g0915 417 MobiDBLite consensus disorder prediction 62 116 - -
Gso20g0915 417 Pfam B-box zinc finger 18 60 IPR000315 GO:0008270
Gso20g0915 417 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 410 - -
Gso20g0915 417 SMART bboxneu5 15 62 IPR000315 GO:0008270
Gso20g0915 417 CDD Bbox1_BBX-like 19 62 - -
Gso20g0915 417 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Gso20g0915 417 ProSiteProfiles CCT domain profile. 362 404 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0915 Gso-Chr20 38737256 38739419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0915 6 404 C2C2-CO-like Transcription Factor Family AT1G25440 45.972 4.36e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso20g0915 zf-B_box 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0915 - - gmx:100817528 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0915 20 38737256 38739419 Gso10g2428 10 51293823 51295895 GST