Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0913 ATGCCCGAGTCTCGGAAACAACCGGCTTCTAGACCGAAGCAAAAGCTTCATCACCACTCCTTGCAAGAGTCCAAGGCGATGAGAAAACTTCGCATCATTTGCGACGATCCTGATGCTACTGATTCATCCGAAGATGAGACTGAGAAGGTTCAGAGCCCGAGAAGAGTTAAAAGAAACGTGTCTGAGATCTCTCTTCCCCCTCTTCCTCCACCATTCACCACCACTCCTGAAACCAGCTCCTGTGAGGTGAATAGCGGCAAAAATGCAACATTGAAGGGTTTCATTGAAGGTCAACCCCAGAGTAAGAAGAGGGTTTTGACTCACCCCCCATCAACAAGGAGGAACACTTCTGGGAAATTCAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCAGAGATTCGTGACCCCTTTCAGAGTACTCGTATATGGCTCGGCACTTTCAACACTGCAGAAGAGGCTTCCCAAGCCTACGAGGCCAGAAGGCTTGAGTTTGAGGCTATGGCAGAGGCTCAAGCTTACAAAACTAGTTCTGTTTCTGAACCTTTGGCTACAATTTCTGATAATAAGAGTAACTGCTGTAACTCTTCTGCCGCTGCTATCTCCGCCGCTGCCGTCTCCGCCGCTGATGTGTCTGTATCTGAGAAGTTTTCTACTACTTTTGATGACTTAGAAGAGAGTGTGTTGTCTCACAATTCACCATCCTCTGTGCTAGAGTTGGATACATTGGCTTCCAAATCCCTTGAGAAGGGCAATGTTTCAACCGAGGAAGCTATTGAGGCTAATGATTTGGTGGCTGAACTTGCAGGGTTAGAGGTACCAGATGTCAGTCTGTTAAACTTGTTACCACCACCATCTGATTCTGGTGGTGCAGCTGCTGCTGTTTCATCTGGGATTGAGCCAAACTTTGGGCTTGATTTTGATTGGCTATCGTTTAATGATTATGGACAAGGTTTTGATGATTTCGGTGGCTTGGAAGATATTCATATTGGTGGGTTTGATGACAATGAGCCTACTGAGCTTCCTGATTTTGATTTTGGTGATTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAGGAGCCCCTGAATATACCTTGTGCCTAA 1107 0.4643 MPESRKQPASRPKQKLHHHSLQESKAMRKLRIICDDPDATDSSEDETEKVQSPRRVKRNVSEISLPPLPPPFTTTPETSSCEVNSGKNATLKGFIEGQPQSKKRVLTHPPSTRRNTSGKFRGVRQRKWGKWAAEIRDPFQSTRIWLGTFNTAEEASQAYEARRLEFEAMAEAQAYKTSSVSEPLATISDNKSNCCNSSAAAISAAAVSAADVSVSEKFSTTFDDLEESVLSHNSPSSVLELDTLASKSLEKGNVSTEEAIEANDLVAELAGLEVPDVSLLNLLPPPSDSGGAAAAVSSGIEPNFGLDFDWLSFNDYGQGFDDFGGLEDIHIGGFDDNEPTELPDFDFGDFGADEFAGWIEEPLNIPCA* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0913 368 MobiDBLite consensus disorder prediction 1 56 - -
Gso20g0913 368 ProSiteProfiles AP2/ERF domain profile. 119 183 IPR001471 GO:0003700|GO:0006355
Gso20g0913 368 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 14 368 - -
Gso20g0913 368 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Gso20g0913 368 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Gso20g0913 368 SUPERFAMILY DNA-binding domain 119 166 IPR016177 GO:0003677
Gso20g0913 368 MobiDBLite consensus disorder prediction 104 118 - -
Gso20g0913 368 MobiDBLite consensus disorder prediction 1 123 - -
Gso20g0913 368 Gene3D AP2/ERF domain 119 175 IPR036955 GO:0003700|GO:0006355
Gso20g0913 368 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 368 - -
Gso20g0913 368 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Gso20g0913 368 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Gso20g0913 368 CDD AP2 119 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0913 Gso-Chr20 38692054 38694330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0913 9 367 AP2-EREBP Transcription Factor Family AT1G68550 32.615 7.45e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso20g0913 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0913 - - gmx:102660769 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0913 20 38692054 38694330 Gso10g2430 10 51331470 51334106 GST