Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0907 ATGGCTACTGATGCCCGTGACTCGCGTCGCAAGTATCGCCGATCATCCTCTCCGGAGGACGTGGACAGATCCTCGAAGCGCCACAAGCACCGCCACCACAGCCACCGCCACCGCCACGGGAGCAAAAAACGCGACGAAGAGATTAAATTCGATGATCGAACAATTGGTGCGGTTCCTTCTCCAACTCCGCACGGGCATCTCCCTGACGACGATGATGTGGAGGAGGGAGAGATCCTTGAAGATGAGGCTCTCGACGGCGAGGTTGGGAAAAAGGAGACGGAATCTGATGCTGAACCCGGTGAAATCAAGGTGACGGGAGATCGAGATGTTCGATCTGATAATCAAAATTCGGGACACCTTACTAAAATTTCAGTAACTAGAAATGAGGACATTAGGGATGATAAATTTATTAGTCCTGCAATCAATGCAGAAGATGATGTCTCTCCTAATTGTTCAAGTTCTGAGACTCGGGATGGAAAGCATGCTCAAGCTCGTACAGATGGCGTGGGCAATGGTTTTTTGGATCCTAAATCTTCCAAAGGGGATAAGTGGCACAATGGGGAACTTGGACATTTTAAAGGTAATGAGAAACTAAAAGGAGACTTTGATGATGAAACACTGGAGGCTAATGTGAGGAAAGCACATTACAATAGGAATTCATCCTCTGAAAGTGGAGGGGGAAAATATAGAATGTCAGGAAGTTCTCCTTCTCATGGTAGATATAGAAGTCGATCAAGATCAATTGGTCATACTAGAGACAGGTCTCGCTCTCGTAGTATCATAGATGAATATGCTCATTCCAAGAGAAGGCGCTCTGACTATGACCATGATGAGGAAAGAGTGAGGGTACGTGGAAGGGAGCATGGTCATGGCAGTGTGGTAGATGATAGAAGGGAATACAGTACCAGATATCACAATCGAGAGGCCAGGGATAGAGATAGGAGTAGGGATAGAGATGTGGATAGAGACTTGCACAGAGAAAAGAAACAAGAGGAAACTAGCAGGGGTAAAGAGATTGAGTGGGAACACAAAAGGGGAAAGGAACGTGAAAGGAGCCGTGAGAGGTATAGAAGGGATGCAGAAAAAGATAGGAGCAGGGAAAGGGAGGAGGATGGGGACAGGAGACAAGAAAAGGAAAGAGATAGGAGCTGGGATACAGTGTTTGAGAGGGATAGGAGAAGGGAAAAGGAAAGAGATAGAAGTAGGGACAGAACAATAGGTGGCAAGAGAGATAGAGACCCGGAGAATGAAAGGGATGATAAGAATCGGGAAAGGCGAGATGATAGATATGGGCACAAAGATAGAGACACTGCAAATGGTAAGGATAGGCATCTGCGTCATGAGGATGGTAATGACAACGGAGATAGATATAGAAAACATTCAAGGCATGAAGAAAATGAATACCATTGGGAAAGAAAAAGAAATTCTGATAATCCTGTAAAGGTTTATAATTCAATGGGAAGTACTGCAGAAGTGGATGAAAGCAAACTAACAAGCAGTGAGGTTGAACCAGATGACTTAGAGGAGGATACATTGCAATTACCTGAGCAAGAAGAGGAAGATCTCAACAGGATTAAAGAAGAGAGTAGAAGAAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGTAGAAGCAGTGGTTGGAAATGAAGGAAATGACAAGGATGCAGACATTCCTAATGACATCTCTGAAGCATGTGATGGTAAGACTGATGATGCTGATTATGTGGAGCCATCATTTGCTGTTGGGAAATCTCCTGAAAATGTGAATGTTGCTTCTAAGAAGATATCTCCTGCTGGAGGCCTGGGTGAGGGTACTCCAAAGAGTGAAAGGTCAGAGGACAAGTTTTGTGATGATATATTTGGTGAGACGCCAACGGGAGTTCGGAAATCAGGAAAAGGAGATGGTTTGCTGATTGAGAGGGTTGGCCTACATGACAATTGGGACGATGCAGAGGGTTATTATAGCTATCGTATTGGTGAAATACTTGATAGCCGATATGAAGTCACAGCTGCACATGGGAGGGGTGTCTTTTCGACAGTTGTTCGGGCAAAGAATCTAAAGATGGGAAATGGTGAGCCTGAAGAAGTAGCAATAAAAATTATTCGTAGTAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTCATATTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGATACAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTTACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCTCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAATATGTTGGTAAATGAGGCTAAGAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAATACTTGGTTTGCCATATGATCATCCACTGGATATTTGGTCTGTAGGTTGTTGTTTGTATGAGTTGTATATAGGGAAGGTTCTTTTCCCAGGGTTTACAAACAATGACATGCTACGGCTTCACATGGAACTGAAGGGCCCTTTTCCAAAGAAGATGCTGCGTAAGGGAGCATTTACTGAACAGCATTTTGATCAGGATCTGAATTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAGGACCATAAAGCGACTGATACTCAACATTAAGCCAAAAGATATTGGGACACTCATTACTGGCTCTCCTGGGGAGGATCCAAAAATGTTAGCCAACTTTAAGGATCTTCTGGAAAAAGTTTTTGTCTTGGATCCAGACAAGAGGCTGACAGTGTCACAAGCTCTGAACCACCCATTCATCACTGGCAAGTGA 2970 0.4327 MATDARDSRRKYRRSSSPEDVDRSSKRHKHRHHSHRHRHGSKKRDEEIKFDDRTIGAVPSPTPHGHLPDDDDVEEGEILEDEALDGEVGKKETESDAEPGEIKVTGDRDVRSDNQNSGHLTKISVTRNEDIRDDKFISPAINAEDDVSPNCSSSETRDGKHAQARTDGVGNGFLDPKSSKGDKWHNGELGHFKGNEKLKGDFDDETLEANVRKAHYNRNSSSESGGGKYRMSGSSPSHGRYRSRSRSIGHTRDRSRSRSIIDEYAHSKRRRSDYDHDEERVRVRGREHGHGSVVDDRREYSTRYHNREARDRDRSRDRDVDRDLHREKKQEETSRGKEIEWEHKRGKERERSRERYRRDAEKDRSREREEDGDRRQEKERDRSWDTVFERDRRREKERDRSRDRTIGGKRDRDPENERDDKNRERRDDRYGHKDRDTANGKDRHLRHEDGNDNGDRYRKHSRHEENEYHWERKRNSDNPVKVYNSMGSTAEVDESKLTSSEVEPDDLEEDTLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQHQQVEAVVGNEGNDKDADIPNDISEACDGKTDDADYVEPSFAVGKSPENVNVASKKISPAGGLGEGTPKSERSEDKFCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSYRIGEILDSRYEVTAAHGRGVFSTVVRAKNLKMGNGEPEEVAIKIIRSNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFRYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELYIGKVLFPGFTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKRTIKRLILNIKPKDIGTLITGSPGEDPKMLANFKDLLEKVFVLDPDKRLTVSQALNHPFITGK* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0907 989 MobiDBLite consensus disorder prediction 142 527 - -
Gso20g0907 989 MobiDBLite consensus disorder prediction 83 115 - -
Gso20g0907 989 MobiDBLite consensus disorder prediction 26 40 - -
Gso20g0907 989 CDD STKc_PRP4 670 986 IPR044092 GO:0004674|GO:0006468|GO:0045292
Gso20g0907 989 SUPERFAMILY Protein kinase-like (PK-like) 658 988 IPR011009 -
Gso20g0907 989 MobiDBLite consensus disorder prediction 1 25 - -
Gso20g0907 989 SMART serkin_6 671 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0907 989 Gene3D Transferase(Phosphotransferase) domain 1 731 987 - -
Gso20g0907 989 Gene3D Phosphorylase Kinase; domain 1 642 730 - -
Gso20g0907 989 MobiDBLite consensus disorder prediction 1 126 - -
Gso20g0907 989 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 337 989 - -
Gso20g0907 989 Pfam Protein kinase domain 673 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0907 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Gso20g0907 989 ProSiteProfiles Protein kinase domain profile. 671 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0907 989 MobiDBLite consensus disorder prediction 598 617 - -
Gso20g0907 989 MobiDBLite consensus disorder prediction 213 242 - -
Gso20g0907 989 MobiDBLite consensus disorder prediction 479 495 - -
Gso20g0907 989 MobiDBLite consensus disorder prediction 178 212 - -
Gso20g0907 989 MobiDBLite consensus disorder prediction 246 478 - -
Gso20g0907 989 PANTHER DUAL SPECIFICITY PROTEIN KINASE 337 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0907 Gso-Chr20 38592487 38599391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0907 624 988 MAP Kinase Gene Family AT2G18170 30.446 2.04e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Gso20g0907 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0907 K08827 - gmx:100776908 1846.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0907 20 38592487 38599391 Gso10g2436 10 51397362 51403494 GST