Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0901 ATGCAAAGCTTCAACACAACAACCGAATCAGAATCAATTTCACCACTCTATTGCCATTCTCCCTTCTTTCACCGGGGAAATGACACCAGCCGAAATCCATCGCGTTTCTCGGATCTTCAGCATTCTTTTCGACAACACGATGCCGTTGATTTAAGCTCAAGTTCTGTGTTTGGTGGAAAGTCGAGCAATGTGGCTGTTGTTGCAAGCAACTTACAGTGTGGGACATTCAACACGAACCTTGGGTGTGCAGAATTTGATTCCACCGAGCAGGGACCTATGTTTCAGAGAGGAACAACTGTGTCCATGGCCACGGGGAACCAGCATGTTGAGAACTGGGCAGATGATGGCCACCCCACTGAAGATACTTGCACTGATATAGACACCGATGATAAAAATCAATGTTTCTCAACTGTGTCTTGGTGCAATGGAGTTGGGGACGGGGCACTTGTAGTTGTGGACTCTCATGATCAAAGTAAGACTAGGGTTAAAGCTGAAGACCAGAAGACTGTTCGTAGGCTAGCTCAGAATCGGGAGGCTGCGAAGAAGAGTCGGTTGAGGAAAAAGGCATATGTGCAACAATTGGAGAACAGCCGAGTTAGGCTTGCGCAATTAGAGCAAGAACTTCAACGGGCACGTCAGCAGGGTGCATTTATTGCAACTGGAATCCCGGGGGATCGCGGTCATTCTAGTGTTGCAAATGGTGCTTTAGCATTTGACATGGACTATGCCCGTTGGGTTGATGAGCATCAACGGTTGATCATTGATATAAGATCAGCTATAAATTCTCAAATGGGTGAGAATGAACTGCACCTTCTTGTAGATGGAGCCATGGCACATTATGATGAATTATTTAGGTTGAAGAGCATAGGGGCAAAGGTTGATGTATTTCACATACTTTCTGGGATGTGGAAGACACCAGCAGAAAGATGCTTCATATGGCTCGGTGGATTTCGTTCATCTGAACTTCTCAAGATAGTTAGAAACCAGCTTGAGCCGTTAACCGAACAGCAGTTGATGGGCATTTACAATCTGCAGCAGTCTTCCCAGCAGGCAGAGGATGCATTATCACAAGGCATGGAAGCATTGCAGCAGTCTCTTTCAGAGACACTTTCGTCCTCCTCTCTAGGGCCCTCTGGTTCTGAAAATGTTGCTGAGTACATGGGCCAAATGGCAATTGCATTGGGCAAGCTTGCCACACTAGAGAATTTCCTTCATCAGGCTGACCTATTGAGGCAACAAACTCTGCAACAGATGCGTCGAATTTTGACCACGTGCCAAGCTGCTCGTGCTCTCCTTGTGATAAATGATTACGTTACACGGCTTAGAGCTCTTAATTCATTATGGTTAGCGTGTCCCAGAGAGTACTAG 1368 0.4635 MQSFNTTTESESISPLYCHSPFFHRGNDTSRNPSRFSDLQHSFRQHDAVDLSSSSVFGGKSSNVAVVASNLQCGTFNTNLGCAEFDSTEQGPMFQRGTTVSMATGNQHVENWADDGHPTEDTCTDIDTDDKNQCFSTVSWCNGVGDGALVVVDSHDQSKTRVKAEDQKTVRRLAQNREAAKKSRLRKKAYVQQLENSRVRLAQLEQELQRARQQGAFIATGIPGDRGHSSVANGALAFDMDYARWVDEHQRLIIDIRSAINSQMGENELHLLVDGAMAHYDELFRLKSIGAKVDVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMEALQQSLSETLSSSSLGPSGSENVAEYMGQMAIALGKLATLENFLHQADLLRQQTLQQMRRILTTCQAARALLVINDYVTRLRALNSLWLACPREY* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0901 455 Coils Coil 187 214 - -
Gso20g0901 455 SUPERFAMILY Leucine zipper domain 168 211 IPR046347 GO:0003700|GO:0006355
Gso20g0901 455 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 166 210 IPR004827 GO:0003700|GO:0006355
Gso20g0901 455 PANTHER TRANSCRIPTION FACTOR TGA9 43 454 - -
Gso20g0901 455 CDD bZIP_HBP1b-like 168 220 - -
Gso20g0901 455 Pfam bZIP transcription factor 167 207 IPR004827 GO:0003700|GO:0006355
Gso20g0901 455 SMART brlzneu 164 235 IPR004827 GO:0003700|GO:0006355
Gso20g0901 455 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 171 186 IPR004827 GO:0003700|GO:0006355
Gso20g0901 455 Gene3D - 167 217 - -
Gso20g0901 455 ProSiteProfiles DOG1 domain profile. 235 451 IPR025422 GO:0006351|GO:0043565
Gso20g0901 455 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 43 454 - -
Gso20g0901 455 Pfam Seed dormancy control 255 327 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0901 Gso-Chr20 38548158 38552494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0901 16 454 bZIP Transcription Factor Family AT1G68640 54.405 5.35e-156 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso20g0901 DOG1 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0901 K14431 - gmx:100775280 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0901 20 38548158 38552494 Gso10g2441 10 51436277 51440334 GST