Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0897 ATGGCTGCGAAGGAAGAGAATCGAATATTTGTTGGAGGTTTATCTTGGGAAGTTACGGAGCGTCAACTCGAGCATGCCTTTGCTCGTTACGGCAAAATTCTCGAATGCCAGATCATGATGGAAAGGGATACAGGCCGTCCACGTGGATTTGGTTTTATCACATTTGCAGACCGTAGGGGAATGGAGGATGCTATCAAGGAAATGCATGGACGGGAAATTGGTGATCGTATCATCTCAGTCAACAAGGCACAGCCCAAGATGGGGGGTGATGATGTAGACCAAGGTTACAGAGGTGGCTACTCATCAGGTGGTAGGGGAAGCTATGGTGCTGGAGATAGGGTAGGACAGGATGACTGCTTCAAATGTGGGCGTCCAGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGTCGTGGTCGGGGTGGTAGCTCATTTCCTTCACGTCCTAGGTTTGGAGCTGCTGGTGGAAATGGGGATCGTCTAGGTGGTGAACGTGATCGATACGTTGATGATCGGTATGAGGGAGGACGTTATGGAGATAGGGATCGTTTTGACAACCGTGACTACAAATATGGCAGCCGTGATCGCTATGCTAGTGACAGGTATCCAACCAGTGGAGATCGATTCGCAAGTGATCGATATGGCGGTGGCTCAGATTACCCGCAAAATGGTTATGGCAAGGAAAGAGGGTATGACCGGTATGGTGGTCCACGAGGAGGTGCTGATAGGTATGGAAGTGGAATGGGAGGTCGTGATGAAGGAAGGAGTTATAGGGGTAGACCTGGTCCATATGATCGCCCAAGTAGGGGTTCTCGTCCGTCACTTGATCGCTACTGA 840 0.5095 MAAKEENRIFVGGLSWEVTERQLEHAFARYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDVDQGYRGGYSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGGRGRGGSSFPSRPRFGAAGGNGDRLGGERDRYVDDRYEGGRYGDRDRFDNRDYKYGSRDRYASDRYPTSGDRFASDRYGGGSDYPQNGYGKERGYDRYGGPRGGADRYGSGMGGRDEGRSYRGRPGPYDRPSRGSRPSLDRY* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0897 279 MobiDBLite consensus disorder prediction 84 110 - -
Gso20g0897 279 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 237 - -
Gso20g0897 279 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Gso20g0897 279 SUPERFAMILY Retrovirus zinc finger-like domains 103 138 IPR036875 GO:0003676|GO:0008270
Gso20g0897 279 SUPERFAMILY RNA-binding domain, RBD 5 111 IPR035979 GO:0003676
Gso20g0897 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Gso20g0897 279 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Gso20g0897 279 MobiDBLite consensus disorder prediction 135 279 - -
Gso20g0897 279 MobiDBLite consensus disorder prediction 161 203 - -
Gso20g0897 279 Gene3D - 1 117 IPR012677 -
Gso20g0897 279 Gene3D - 118 156 - -
Gso20g0897 279 SMART rrm1_1 8 81 IPR000504 GO:0003723
Gso20g0897 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Gso20g0897 279 PANTHER TRANSFORMER-2-RELATED 1 237 - -
Gso20g0897 279 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0897 Gso-Chr20 38503515 38508867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0897 9 88 C2H2 Transcription Factor Family AT2G19380 42.500 5.57e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0897 - - gmx:100809519 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0897 20 38503515 38508867 Gso20g0897 20 38503515 38508867 ECH
Gso20g0897 20 38503515 38508867 Gso10g2445 10 51464661 51470035 GST