Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0893 ATGCTCCACATCACCTGCATTCTTTTAATGTGCCTTCTAAGTTCCTTCTCACCCCCAATCAACGCTCTTCTCAACCTCACTTTACCCCACCAACACCCTCACCCCGAATCCGTCGTCCACGATCTCCAACGGAAGGTGAATGCCTCACTATGGAGAAGGGAAATGCTGTCAAAGGAGGACCAACAAGAAGGCATGTCGTCGTCGTCGTGTCTGACCGGAAACCCCATCGACGACTGCTGGCGGTGCGATCCGAACTGGGCGGCGGACCGGCAGAAGCTGGCGGAGTGCGGCCTAGGGTTCGGCAAATACGCGATGGGCGGCAAAGGCGGGCAGATCTACATCGTGACGGACTCCTCCGACCGCGACCCGGCCAACCCCGTTCCCGGCACCCTCCGCCACGCCGTCATCCAGGACGAGCCTCTCTGGATCGTCTTCGCCGCCGACATGACCATAAACCTAAAACACGAGCTCATCTTCAACAGCTACAAAACCCTGGACGGCCGCGGCGCCAACGTCCACGTCACCGGCCACGGCTGCATCACGCTCCAGTACGTCTCGAACATCATCATCCACAACATCCACGTCCACCACTGCACTCCCTCCGGGAACACCAACATACGGGCCAGTCCAACGCACGTAGGGTGGAGGGGCAAATCGGACGGTGACGGGATTTCGATCTTCGGCTCACGGAAGATCTGGATCGACCATTGCTCGCTGTCGTACTGCACGGACGGTTTGATCGATGCTATTATGGGGTCCACTGGGATTACTATTTCGAATAGCCACTTTGCGCACCACGATGAGGTGATGCTTCTGGGACACGACGATAAGTATTTGCCAGATAGGGGCATGCAGGTTACAATCGCGTTTAATCACTTCGGTGAGGGTCTGGTGCAGCGTATGCCACGATGCAGGCTCGGTTACATCCACGTCGTTAATAATGACTTCACGCAGTGGAAGATGTATGCTATCGGCGGTAGCGCTAACCCCACCATCAACAGCCAGGGTAACCGTTACACCGCTCCCGCAGACCCTGATGCCAAAGAGGTGACGAAGCGCGTGGACACAGACGATAGAGAGTGGAGTGGTTGGAATTGGAGGACGGAAGGGGACATAATGGTAAATGGAGCGTTCTTTGTACCCTCAGGGGCGGGGCAGAGTGCACAGTACGCAGAGGCCACCAGTGTGCAAGCCAAATCCGCTGTTCAAATTGACCAGCTCACTATGTACTCCGGTGTCTTCGGTGATCCCAGGGATAATGGAGATTTATATCCCGGTTTCAACGGCGGTGGGACCGTGACCGGAGCCACCAGCAAAGGCAACACAGAGGGGTCCAGCAGTGACGATGGGGACTTCTTTGGGATGATATTCAGAGGCAGCAGCAGCAGCCAAGCAGCGCCACCATCACCTTCTTCGTCCATTGTATTTGTTTCAACCTTTTTGTCTCTTTTAATTATTTTTATTTTGGACACTACCACCAACCATGCCATTCTATTATCATTACTATGA 1509 0.5487 MLHITCILLMCLLSSFSPPINALLNLTLPHQHPHPESVVHDLQRKVNASLWRREMLSKEDQQEGMSSSSCLTGNPIDDCWRCDPNWAADRQKLAECGLGFGKYAMGGKGGQIYIVTDSSDRDPANPVPGTLRHAVIQDEPLWIVFAADMTINLKHELIFNSYKTLDGRGANVHVTGHGCITLQYVSNIIIHNIHVHHCTPSGNTNIRASPTHVGWRGKSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSHFAHHDEVMLLGHDDKYLPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWKMYAIGGSANPTINSQGNRYTAPADPDAKEVTKRVDTDDREWSGWNWRTEGDIMVNGAFFVPSGAGQSAQYAEATSVQAKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNTEGSSSDDGDFFGMIFRGSSSSQAAPPSPSSSIVFVSTFLSLLIIFILDTTTNHAILLSLL* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0893 502 PANTHER PECTATE LYASE 18-RELATED 7 435 IPR045032 GO:0030570
Gso20g0893 502 PANTHER PECTATE LYASE 7 435 - -
Gso20g0893 502 SMART amb_all 148 345 IPR002022 -
Gso20g0893 502 Gene3D - 73 415 IPR012334 -
Gso20g0893 502 SUPERFAMILY Pectin lyase-like 74 391 IPR011050 -
Gso20g0893 502 Pfam Pectate lyase 156 337 IPR002022 -
Gso20g0893 502 PRINTS Pollen allergen Amb family signature 96 113 IPR018082 -
Gso20g0893 502 PRINTS Pollen allergen Amb family signature 120 145 IPR018082 -
Gso20g0893 502 PRINTS Pollen allergen Amb family signature 156 172 IPR018082 -
Gso20g0893 502 PRINTS Pollen allergen Amb family signature 220 241 IPR018082 -
Gso20g0893 502 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Gso20g0893 502 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Gso20g0893 502 PRINTS Pollen allergen Amb family signature 364 388 IPR018082 -
Gso20g0893 502 PRINTS Pollen allergen Amb family signature 393 416 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0893 Gso-Chr20 38452641 38457249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0893 1 491 Polysaccharide Lyase AT3G53190 62.828 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0893 K01728 - gmx:100808438 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0893 20 38452641 38457249 Gso20g0893 20 38452641 38457249 ECH