Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0887 ATGTTTCAAGAGAGCAGCGCGACACGGTGGCCGACTCAGCCGACTCAGTGGACTCGCTACCACGACAAGCTCTTCGAGCGGGCTCTGCTGGTCGTGCCGGAGGACCTGCCGGACCGGTGGGAGAAGATCGCCGACCAGGTTCCCGGCAAGTCGGCGGTGGAGGTCAGGGAACACTACGAGGCCCTCGTTCACGACGTCTTCGAGATCGACTCCGGCCGAGTCGAGGTCCCGAGTTACGTCGATGACTCGGTGGCGACACCGCCCAGTGGCGGTGCTGAAATTTCTACTTGGGACAACGCTAATCAGATCTCATTCGGGTCCAAGCCTAAGCAACAAGGCGACAACGAAAGGAAGAAGGGCACGCCTTGGACTGAAGAGGAACACAGGCTGTTTCTCATTGGGCTCAGTAAATTTGGGAAAGGAGATTGGAGAAGCATTTCAAGAAATGTTGTTGTGACAAGAACACCAACTCAAGTAGCTAGCCATGCCCAGAAATACTTTCTCCGCCAGAATTCGGTGAAGAAAGAGAGGAAGAGATCAAGCATTCATGACATAACCACTGTGGACAGCAACTCAGTTCCTGTGCCCATTGATCAGAACTGGGTTCCTCCTCCGGGTGGTTCAGTGCAGCAATCACTGCAATACCCATCAAGCAACATGCTCGATCAAATGGGTACATTTGGGTATTCAAACTATGGCTTTGGCATGTAA 711 0.5331 MFQESSATRWPTQPTQWTRYHDKLFERALLVVPEDLPDRWEKIADQVPGKSAVEVREHYEALVHDVFEIDSGRVEVPSYVDDSVATPPSGGAEISTWDNANQISFGSKPKQQGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGGSVQQSLQYPSSNMLDQMGTFGYSNYGFGM* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0887 236 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 235 IPR043363 -
Gso20g0887 236 CDD SANT 17 63 IPR001005 -
Gso20g0887 236 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Gso20g0887 236 SMART sant 13 65 IPR001005 -
Gso20g0887 236 SMART sant 119 169 IPR001005 -
Gso20g0887 236 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Gso20g0887 236 Gene3D - 12 76 - -
Gso20g0887 236 Gene3D - 121 173 - -
Gso20g0887 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 171 IPR017930 -
Gso20g0887 236 ProSiteProfiles Myb-like domain profile. 17 63 IPR001005 -
Gso20g0887 236 CDD SANT 122 167 IPR001005 -
Gso20g0887 236 MobiDBLite consensus disorder prediction 102 123 - -
Gso20g0887 236 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Gso20g0887 236 ProSiteProfiles SANT domain profile. 118 171 IPR017884 -
Gso20g0887 236 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 12 235 - -
Gso20g0887 236 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Gso20g0887 236 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 118 170 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0887 Gso-Chr20 38360375 38362390 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso20g0887 Myb_DNA-binding 4.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0887 - - gmx:547481 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0887 20 38360375 38362390 Gso10g2455 10 51585326 51587016 GST