Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0886 ATGGACATGTCAAATCCTTCTGTATTTGTAAATGCTCAGTTGATTCCCAACTTTATAGGGAAGAAAGTAAGAGCAGTGGTTCAGGTGAGCCAATGTGATGGTGGGGTTACCACAGCAAAATCCACTGATGACTGTCAATTAACCATAAAAGGGTTGCCACAAGTCCCTCTTATGAATTATATTGAGGTCATTGGCATTGCTGAAAGTAACAGTTCTATTGATGCCGAAATATGGACTGACTTTGGCAGCACCTTTGACACCTTCTCTTACAATCAGTTGTGCCAACTAGCCAATGGTGAATTTAAGGGTCTGTTTCTCTAG 321 0.4112 MDMSNPSVFVNAQLIPNFIGKKVRAVVQVSQCDGGVTTAKSTDDCQLTIKGLPQVPLMNYIEVIGIAESNSSIDAEIWTDFGSTFDTFSYNQLCQLANGEFKGLFL* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0886 106 Gene3D - 3 106 IPR012340 -
Gso20g0886 106 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 106 - -
Gso20g0886 106 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 1 106 - -
Gso20g0886 106 Pfam Replication factor A protein 3 3 99 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso20g0886 106 SUPERFAMILY Nucleic acid-binding proteins 3 105 IPR012340 -
Gso20g0886 106 CDD RPA3 6 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0886 Gso-Chr20 38353705 38355282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0886 1 106 Core DNA Replication Machinery Family AT4G18590 56.604 2.61e-43 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0886 K10740 - gmx:100306197 216.083