Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0867 ATGGCGGCATCATCTTCCTCAGCGTCGCTCTTTGGATTTAGAGAAGAGGATCAGAATCAGATGAAGCAACAACATTCCCTGACACCATCTTCATCAACAACACCAGCTGCACCCCCACCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACACGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCTGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTCATCACCCACAGGGCCTTCTGCGATGCACTGGCTCAAGAGAGTGCAAGACAGCCACCTAGCCTTAGCGGCGGAGGAATTGGCAGTCATCTGTACGGAAGCACCACCAACATGGCCTTAAACCTATCTCAGGTCGGTTCTCAAATCTCAACCATGCAAGACCCTAACGCCCAGCCCACCGAGCTCCTCCGCCTGGGCGCCGCCTCCGGTCGAACCGGCCAGTTCGACCACATCCTCGGTTCACCCTTCCGACCGTCGAACCAACAACAACAACAACAACCTTTCTTCATGTCCTCCGAACCCAACCAAACCTACCACCACCCCGACCAAAACAAACCCTTCCAACAAGGGTTAATGCAGTTGTCTGATCACCTTAACAACAACAGCCACCACAATAATTCACCCTTCAGCCTTCCCTTTCTCTCCAACAACACAAGCAACGCTTCGTTCTCTGAACACTTCAACAATGCCAATGGAGGAGGAGGCAACAACAACAACAACAACAACAACAACAACGAGGGCACTAACTACTTCGCAACTTCAAGTGCACCTTCTCTCTTCAGCAACAGTGTCAATGCCAGTGCCTTATCTCACATGTCCGCAACTGCACTGCTTCAGAAAGCAGCACAAATGGGTGCAACTACGAGCAACGGCGGCACCGCTTCGCTGTTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGGCGGCGGCTCGAAACTGGTGAATGCTGCAAACTACGTCAGTGGCATGTTCGGAGGGAATAATCACGTGAACGAACAGAGTAACAGTAACCTCCAAAACCTGGTGAACTCGTTCGCTGTTGGTGGAAACTCTTCCATTTTCGAAGATGGGTTTGAAGCATATGAACATAGTAACAATAACAGTAATAGGGACCCAAAAGTGCACGCAATGAGTGGAAGTAGCAGCAGCATTGGAGGGTCTGATAGGCTCACCCGCGATTTTCTGGGTGTTGGTCAGATAGTGAGGGGAATGAGTGGGAGTGGAGGAGTTGCGCAGAGAGAACAACAGCAGCAACATGGCTTCAACTTGAGTTCTTTGGAGGCAGAAAGATATAATAATAATAGCAATAATGCTGCGCCGTCATCAGGGCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1707 0.4968 MAASSSSASLFGFREEDQNQMKQQHSLTPSSSTTPAAPPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPSLSGGGIGSHLYGSTTNMALNLSQVGSQISTMQDPNAQPTELLRLGAASGRTGQFDHILGSPFRPSNQQQQQQPFFMSSEPNQTYHHPDQNKPFQQGLMQLSDHLNNNSHHNNSPFSLPFLSNNTSNASFSEHFNNANGGGGNNNNNNNNNNEGTNYFATSSAPSLFSNSVNASALSHMSATALLQKAAQMGATTSNGGTASLLKSFGSASSSSGGGSKLVNAANYVSGMFGGNNHVNEQSNSNLQNLVNSFAVGGNSSIFEDGFEAYEHSNNNSNRDPKVHAMSGSSSSIGGSDRLTRDFLGVGQIVRGMSGSGGVAQREQQQQHGFNLSSLEAERYNNNSNNAAPSSGQAFGGGGGNFQ* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0867 568 SMART c2h2final6 147 167 IPR013087 -
Gso20g0867 568 SMART c2h2final6 112 142 IPR013087 -
Gso20g0867 568 SMART c2h2final6 71 93 IPR013087 -
Gso20g0867 568 Gene3D Classic Zinc Finger 54 119 - -
Gso20g0867 568 MobiDBLite consensus disorder prediction 478 499 - -
Gso20g0867 568 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 528 - -
Gso20g0867 568 MobiDBLite consensus disorder prediction 1 55 - -
Gso20g0867 568 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 528 - -
Gso20g0867 568 Gene3D Classic Zinc Finger 125 204 - -
Gso20g0867 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Gso20g0867 568 MobiDBLite consensus disorder prediction 546 568 - -
Gso20g0867 568 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Gso20g0867 568 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Gso20g0867 568 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Gso20g0867 568 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0867 Gso-Chr20 38179601 38186479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0867 41 523 IDZ Gene Family AT2G02070 49.081 6.83e-136 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g0867 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0867 K25870 - gmx:100799389 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0867 20 38179601 38186479 Gso10g2473 10 51714636 51721034 GST