Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0858 ATGGATGCAATTGTTAGCTTGAATACTCTAAGTACAAGAGTGACACCATCTTCACTTCAAACTGCATGCATGGCTGCTCATCGTCCAGGGAGGGATGCTACCCTGCCAATCCTTTTCTTCAAGATTATTCTTAAAACTAATCTTGAAAGGCTTAAAATACCTAACAAATTTACAAGCAAATATGGAGGAGGCTTGCCAAATCCAGTGTTTATCAAGCCTTTGGATGGCACTCAATGGAAAGTGAATTGGACAAAACAGAACGGAACTTCTCAGATTGATGTACTCATACTTGACCAAAGTGCACTAGAGATAGACTATCTTTGTGACACTTGTGATGAAAATGAAACCCTCGATCATACTCATGAGGCACCCAATACGATTTTTGGTGAATGGCCAGATCAGAAAGCTGAAAAAATGAGAGGAGAAGAGCCTATTGAAAGAACTTCATCATTGAATATGCCAACGCAAAGTAGAGCAAAGGAAGTAGCAAGAAATTTCATCTCATACAATCCTTTCTTCACGGTTTTCATAAAGCCTGTTCATGTAGCAGATGGCCGGCTGCCTTTACCAGATTTGAAAGGTATTATTGAGAACAAGGAGAAGTATCTGAAGCTGCAGCTTGGGGAAAGATCATGGAATGTTAAGTTGCTCAATAATAGGCTCTCTGCTGGTTGGACCTCGTTTGCAAGTGAAAGTGAATTGCAACCAGGAGACGTTTGTGTATTTGAACTGATTAACAGGGAGGATTCGGTTTTTAAAGTTCACGTCTTCAAAAGACACTGTTAG 786 0.402 MDAIVSLNTLSTRVTPSSLQTACMAAHRPGRDATLPILFFKIILKTNLERLKIPNKFTSKYGGGLPNPVFIKPLDGTQWKVNWTKQNGTSQIDVLILDQSALEIDYLCDTCDENETLDHTHEAPNTIFGEWPDQKAEKMRGEEPIERTSSLNMPTQSRAKEVARNFISYNPFFTVFIKPVHVADGRLPLPDLKGIIENKEKYLKLQLGERSWNVKLLNNRLSAGWTSFASESELQPGDVCVFELINREDSVFKVHVFKRHC* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0858 261 ProSiteProfiles B3 DNA-binding domain profile. 172 260 IPR003340 GO:0003677
Gso20g0858 261 SUPERFAMILY DNA-binding pseudobarrel domain 170 260 IPR015300 -
Gso20g0858 261 SMART B3_2 172 260 IPR003340 GO:0003677
Gso20g0858 261 Pfam B3 DNA binding domain 172 259 IPR003340 GO:0003677
Gso20g0858 261 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 34 89 - -
Gso20g0858 261 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 85 260 - -
Gso20g0858 261 Gene3D - 36 96 IPR015300 -
Gso20g0858 261 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 85 260 IPR039218 -
Gso20g0858 261 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 34 89 IPR039218 -
Gso20g0858 261 SUPERFAMILY DNA-binding pseudobarrel domain 38 88 IPR015300 -
Gso20g0858 261 CDD B3_DNA 171 258 IPR003340 GO:0003677
Gso20g0858 261 Gene3D - 153 260 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0858 Gso-Chr20 38060450 38062187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0858 147 258 REM Transcription Factor Family AT1G49480 32.773 9.45e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso20g0858 B3 1.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0858 - - gsj:114402091 536.569