Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0857 ATGGGCACTGTTGATCCAAATGTGGAAAAGTTGCATGCAGATAAGGGTGTTCGTTCTGATCATCATCAGACCAAGGTTAGAGTTAGACCAAGGTCACCATTGGTCTCTTCTGAACCTCGTAATAAAATGCCAAGTGGCAGTCATCGGAATGTGGAAAGAAACTTCAATCTGCAAAAGTTGGATGCAGATGCCGTTGTTCATAGTGATGAAGGGGCCAAGTTTCGAAAATCTGTGAAGCACCAGCCAAGAGGTGAGAAGGCTATTGAAAGAACTTCATCTTTGAATACACCCAAGCTACTCAGAGCTAAGAAAGTAGCAAGGAATTTTGTCTCAAACAATGTTTTTTTCACAGTCGTCATAACCCGGCCTCAGTTGGAAGAAGGTGCATGGAAAGTTGTTCCCAAGTTCTTGGATATGGAGAGGAAAAAACAGAATGTGATGTTGCAGATTGAGAATCGGATGTGGCCTGTGAAGTTGACAAATGGTGGTGGTGATATGCAATATGACCGGTTCACTTCTGGTTGGTCTTTGTTTGCAAAAGAGAGTAAATTGCAAGCTGGTGACATTTGTATCTTTGAGTTGATTGACCCCGATGGTCCAACTCTTGAAGTTCATATTACAAAAGCTAGATAG 633 0.4218 MGTVDPNVEKLHADKGVRSDHHQTKVRVRPRSPLVSSEPRNKMPSGSHRNVERNFNLQKLDADAVVHSDEGAKFRKSVKHQPRGEKAIERTSSLNTPKLLRAKKVARNFVSNNVFFTVVITRPQLEEGAWKVVPKFLDMERKKQNVMLQIENRMWPVKLTNGGGDMQYDRFTSGWSLFAKESKLQAGDICIFELIDPDGPTLEVHITKAR* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0857 210 MobiDBLite consensus disorder prediction 38 53 - -
Gso20g0857 210 Pfam B3 DNA binding domain 115 208 IPR003340 GO:0003677
Gso20g0857 210 PANTHER B3 DOMAIN-CONTAINING 22 209 - -
Gso20g0857 210 ProSiteProfiles B3 DNA-binding domain profile. 116 210 IPR003340 GO:0003677
Gso20g0857 210 SUPERFAMILY DNA-binding pseudobarrel domain 111 207 IPR015300 -
Gso20g0857 210 CDD B3_DNA 115 208 IPR003340 GO:0003677
Gso20g0857 210 SMART B3_2 115 210 IPR003340 GO:0003677
Gso20g0857 210 Gene3D - 98 210 IPR015300 -
Gso20g0857 210 MobiDBLite consensus disorder prediction 8 27 - -
Gso20g0857 210 MobiDBLite consensus disorder prediction 1 55 - -
Gso20g0857 210 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 22 209 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0857 13 195 B3 DNA Binding Superfamily AT3G18990 26.316 2.77e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso20g0857 B3 5.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0857 - - gsj:114401635 417.542