Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0856 ATGAAGCCTCCAGATGGCACTGAATGGGAAGTACAATGGACCAAACAGAATGGTGAGGTTTGGTTTGAAAAGGGTTGGAAGGAATTTGTTGAAAATTATTTCCTGGATCACGGCCATTTGGTTTTCTTCAACTATGAAGGGACTTCTCAGATTCATGTACTCATACTTGACCATACTACACTAGAAATTCACTACCCTTCTTCTCATACTCGTGAAGAAAATGACAACCTTGTCCAGAGTGATGATGAATCAGTTCAAGTTTTGGAGGAAGGGCCTGACAAGAATGCTGAAGAAAATGACAACCTTGTCAACAAGTTAAGGTTTTGGATGAAGGGCCTGACCAGAATATTGCTGATGAATCAGTTCCAAGTTTTGGATGAATGGCATCACCAGAATGCTACACAAATCAAAGGTGAAGGAAGTTTATCAATGAATTGGCCAAAGGAAGCTAGAGCTCAGAAATTAGCAAGAAAATTCGTCTCATTCAATCCATTTTTCACGTATGTACCAGATTTGAAAAGCTATATTGGGAACACGAAGATTGTGATGCTGCAAGTTGGGGAGAATCATGGAGTGTGA 579 0.4007 MKPPDGTEWEVQWTKQNGEVWFEKGWKEFVENYFLDHGHLVFFNYEGTSQIHVLILDHTTLEIHYPSSHTREENDNLVQSDDESVQVLEEGPDKNAEENDNLVNKLRFWMKGLTRILLMNQFQVLDEWHHQNATQIKGEGSLSMNWPKEARAQKLARKFVSFNPFFTYVPDLKSYIGNTKIVMLQVGENHGV* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0856 192 ProSiteProfiles B3 DNA-binding domain profile. 1 59 IPR003340 GO:0003677
Gso20g0856 192 Gene3D - 1 60 IPR015300 -
Gso20g0856 192 SUPERFAMILY DNA-binding pseudobarrel domain 3 66 IPR015300 -
Gso20g0856 192 CDD B3_DNA 4 57 IPR003340 GO:0003677
Gso20g0856 192 PANTHER B3 DOMAIN-CONTAINING 2 179 - -
Gso20g0856 192 Pfam B3 DNA binding domain 3 57 IPR003340 GO:0003677
Gso20g0856 192 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0856 Gso-Chr20 38047871 38049116 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0856 1 83 B3 DNA Binding Superfamily AT1G49475 42.169 1.05e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso20g0856 B3 2.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0856 - - gsj:114402090 408.297