Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0852 ATGCAAAACTTAGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGTATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGCTGGGGAAGAACATATTTTCCCTGTCTCTTCTGTGGCCTCATGCAGGGATAGTACATATCCACACCCCAGAACAAAGCCCTGCGATCTTCTTTCACAGCTTTCCACTTCCATACCCATAGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTGAACTATTCCAATGGCATGGATCCTAACATCTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCGGTGCCAGGTGGACTAGTTGAACTGTTTGTAACTAAACAAGTGCCTGAAGATCATCAACTAATAGATTATGTCATAAACCAGTGCATTGAAGCCGTGAACCACTCAATGAGCTTCCACATTGACGAGAATTCAATGAGCAACATGCAATCAAACCCACTTATAGGCGATGAAAATGAAGGGAACAACAACAGCAGGGACACTTCCACCCTTCAGAACATGTCATCACAATGGACCTCCGCAGTATTGCAAACCAACCAAGAAGATCAGGAGCATGAGCATGAGCATGACACGTATCAGAAAAGCCTCATGACAACAACGGATTCACAATACGTGGAGCCTTTGGAGGCAAAAGAGAAGCAAGAGGAGGACAAGGACTTGCTGAAAAACGTTGTTGGTAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAAGGGAACCAATCCAAGAACCTTGTGGCTGAGAGGAAGAGAAGGAAGAAGCTCAATGATAGGTTATATAACCTTCGTTCTTTGGTTCCTAGGATCTCTAAGCTGGATAGGGCATCCATTCTTGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATGAATTGTGTAAGTGAACTTGGGCCAAATGCTGAACATGATAAGGCCCAAACTGGGTTGCATGTGGGAACATCAGGGAATGGCTATGTCTCCAAACAAAAGCAGGAAGGTACTACTGTCATTGACAAGCAGACCCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCACAGGCCTGATGGGTTTGTGAAACTGATGGAGGCATTGAACACTATTGGCATGGATGTAGTGCATGCCACGGTAACCAGCCACACGGGACTCGTGTCAAATGTTTTTAAAGTGGAAAAAAAGGATAGTGAAACGGTTGAAGCTGAAGATGTAAGAGACTCATTGCTAGAGCTTATGCGGAACCGTTACAGAGGGTGGACTCATGAGATGACAGCAACGTCGGGAAATAGTGTGGAAAGCGATCAACATCAACTCCACAACCACAACCAGATGGGTGCCTACCCGCACGAGTTTCATAGTTAA 1578 0.4518 MQNLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNAGEEHIFPVSSVASCRDSTYPHPRTKPCDLLSQLSTSIPIDNSGIHAQTLLTNQPNWVNYSNGMDPNILEETIGTQVLISVPGGLVELFVTKQVPEDHQLIDYVINQCIEAVNHSMSFHIDENSMSNMQSNPLIGDENEGNNNSRDTSTLQNMSSQWTSAVLQTNQEDQEHEHEHDTYQKSLMTTTDSQYVEPLEAKEKQEEDKDLLKNVVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCMNCVSELGPNAEHDKAQTGLHVGTSGNGYVSKQKQEGTTVIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPDGFVKLMEALNTIGMDVVHATVTSHTGLVSNVFKVEKKDSETVEAEDVRDSLLELMRNRYRGWTHEMTATSGNSVESDQHQLHNHNQMGAYPHEFHS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0852 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 286 335 IPR011598 GO:0046983
Gso20g0852 525 CDD bHLH_AtAMS_like 289 354 - -
Gso20g0852 525 MobiDBLite consensus disorder prediction 170 212 - -
Gso20g0852 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 349 IPR036638 GO:0046983
Gso20g0852 525 Gene3D - 274 351 IPR036638 GO:0046983
Gso20g0852 525 SMART finulus 292 341 IPR011598 GO:0046983
Gso20g0852 525 CDD ACT_UUR-ACR-like 420 484 - -
Gso20g0852 525 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 91 493 - -
Gso20g0852 525 Coils Coil 325 355 - -
Gso20g0852 525 MobiDBLite consensus disorder prediction 256 297 - -
Gso20g0852 525 Pfam Helix-loop-helix DNA-binding domain 293 336 IPR011598 GO:0046983
Gso20g0852 525 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 151 IPR025610 -
Gso20g0852 525 MobiDBLite consensus disorder prediction 213 227 - -
Gso20g0852 525 MobiDBLite consensus disorder prediction 170 231 - -
Gso20g0852 525 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 91 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0852 Gso-Chr20 37994586 37997154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0852 1 498 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.604 1.58e-141 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g0852 bHLH-MYC_N 5.5e-19 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0852 - - gmx:100810576 1041.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0852 20 37994586 37997154 Gso10g2484 10 51859308 51862802 GST