Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0849 ATGGATTTTGACGAGTATGAGTATTTAGAGAAAGCAGTTGAAAACCCTGAAGTTAATCACAGGGCTAATGGTGGGGACAAAAATGTGAAATCCGAAGAGAGAGGGCGTAATGGGAGTTCAAAGCATAAGGATGATGATGATGATGATGTTGTTGATCTCCATCCCAGGCATTCAAAATCTGGAGACAATTCTCGTGATCGCGAGAGGCAGAGAGAAAGAGGCTCAACTCTTCATGGTTCAAAGTCCAGAGATGGAGACAAGGACAGAAACTCCGGGGGCAGCAGGGATAGGAGGAGGGATAGGGACAGAGACCATGAGAACAAGGATAGGAAGAGAGACAAGGAGAGAGACCATGGGGACAAGGATATGAAGAGAGATAGGGAGAGAGACAGAGATCGCAATCGTGACCAAGAAAGGGACAGAAGGGACCGTGGGAGTGAGGCTGAGCAGGAACAGCGAAGCAGAAGTAGATCTGATAGGCTTCGAACTGATCTGGATGACAAAGACAGAGAGGCAAGTCGTGACAGGGAGTATAGAGATAGAGAAAGAAGTCGGGATAAGGATTACAAAGACAGAGAAAGGGTGAGGGAATCAAGGGAACATGATAGAGAAAACAGACGGCATAAAGAGAAAAAGGAAGAAACAACAGAACCTGCTGATCCTGAAAGAGATCAAAGAGCTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATTTGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGATCGCAATTCAAGACGTTCCAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCCGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAATGGACTCACTGGACTTATAGGCCCTTATTCTGGGGGAGCAAGAAAGCTGTATGTTGGTAATCTGCATATCAGTATTACTGAAGCTGATATTCGTAGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATGCAAGAATTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCATGTCCTTGAATGCATGTTCTCGAGCAATGCTCATGCAGAAGTTGGATCGTAGTGGTACTGCATCAAGCATGGTTGGTTCCCTCGGTAATTCTGTTGTCAACAACACAGGTCTTAATCTACCAGCGACAGGAAACATACTCGCAGCTGCGCCTGTTGGTGAATTGGCAGGTGGAGGTCTCCAAATACCCACGGCTACAATTCCTTCTATTGATACAATCGGTGTTGCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCCAAAGATGAGATTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGCTTGGAACGTTAAAACACATATATGTTGACAAGAAGAGTGCTGGTTTTGTCTACTTACGATTTGAAGATACCCAATCTGCAATAAGTGCACAGCAGGCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCTCAATCATATGAGGATAAATTCCCAGACAGCAGATAA 1803 0.4432 MDFDEYEYLEKAVENPEVNHRANGGDKNVKSEERGRNGSSKHKDDDDDDVVDLHPRHSKSGDNSRDRERQRERGSTLHGSKSRDGDKDRNSGGSRDRRRDRDRDHENKDRKRDKERDHGDKDMKRDRERDRDRNRDQERDRRDRGSEAEQEQRSRSRSDRLRTDLDDKDREASRDREYRDRERSRDKDYKDRERVRESREHDRENRRHKEKKEETTEPADPERDQRAVFAYQISLKADERDVFEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGLTGLIGPYSGGARKLYVGNLHISITEADIRRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEFGGNTGDFDDDEGGGMSLNACSRAMLMQKLDRSGTASSMVGSLGNSVVNNTGLNLPATGNILAAAPVGELAGGGLQIPTATIPSIDTIGVASECLMLKNMFDPKDEIEPDFDLDIKEDVEAECSKLGTLKHIYVDKKSAGFVYLRFEDTQSAISAQQALHGRWFAGKMITASFMVPQSYEDKFPDSR* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0849 600 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 421 524 IPR029123 -
Gso20g0849 600 SUPERFAMILY RNA-binding domain, RBD 330 593 IPR035979 GO:0003676
Gso20g0849 600 Gene3D - 326 433 IPR012677 -
Gso20g0849 600 Gene3D - 158 311 IPR012677 -
Gso20g0849 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 506 589 IPR000504 GO:0003723
Gso20g0849 600 MobiDBLite consensus disorder prediction 1 225 - -
Gso20g0849 600 Gene3D - 502 600 IPR012677 -
Gso20g0849 600 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 596 - -
Gso20g0849 600 CDD RRM1_RBM39_like 228 299 - -
Gso20g0849 600 TIGRFAM SF-CC1: splicing factor, CC1-like family 95 598 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gso20g0849 600 CDD RRM3_RBM39_like 505 587 - -
Gso20g0849 600 SMART rrm1_1 331 403 IPR000504 GO:0003723
Gso20g0849 600 SMART rrm1_1 507 585 IPR000504 GO:0003723
Gso20g0849 600 SMART rrm1_1 227 299 IPR000504 GO:0003723
Gso20g0849 600 MobiDBLite consensus disorder prediction 1 224 - -
Gso20g0849 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 303 IPR000504 GO:0003723
Gso20g0849 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 295 IPR000504 GO:0003723
Gso20g0849 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 530 582 IPR000504 GO:0003723
Gso20g0849 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 401 IPR000504 GO:0003723
Gso20g0849 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 330 407 IPR000504 GO:0003723
Gso20g0849 600 SUPERFAMILY RNA-binding domain, RBD 218 318 IPR035979 GO:0003676
Gso20g0849 600 PANTHER CC1-LIKE SPLICING FACTOR 1 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0849 Gso-Chr20 37953847 37963266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0849 233 393 Eukaryotic Initiation Factors Gene Family AT4G34110 30.675 9.71e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0849 K13091 - gmx:100795336 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0849 20 37953847 37963266 Gso10g2488 10 51898168 51906840 GST