Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0835 ATGCAAACTTGGAGTGTTCACTACACCAATTCAAGTTACCCTTTCTCATTTTCATCTCCTTGCTTGCTCCTTTTGGGCTTTGGAATAAGGAAGTCCTTCAAATCTTATGGTTCTTACAACAAACATTCTCGGTTTTCCGGCGCCGGAAACTCTGATTCTGATCACGAGCAGCAGCTCCCCATTCTTCACGACCAAGAAACCCACTGCCACCCTGCCATGCCCGCCGGCGACTACGTCGTCAAAATCAACGAGGACGGAAGCGAGGCCCCCCAGGGCAACAGGATTTGGCGCGAGTCCAGCTACGAATTCTGGAACAACGATGGCGCCACCACCACCGCCGGCGGAAGCGACCAGAGCTTCGATTTCCGCCAGTCGGAGGACCCGCCGTCGCAGCTGATCGGGCACTTCCTTCACAAGCAGCGAGCCTCCGGCGAGATGCAGCTCGACATGGATTTGGAGATGGAGGAGCTGCAGCGCGAAGGCGACGACGGAAAGTTAACGCCGGTGGATGAATCTCCGGTGACTCACCGCGTCTCGAGAGAGCTCAAGGTTTCCTTCGAGGAACCTACCTGCAATGTGAATTTCCTGGAAGCGCAAAACGACGCCGTCAGAAGAAGGCACAGCAAGGACTCGCCGTCGATCGCGGAGTTCCAACGCCCTCCGCAACCGCCCCAACACGACTGTCGCCGGTCTCCCTCGCCGTCGCCAGCCGGCGACGAGGAGGTTGTTCGGTGCACCTCGAACGCTTCCTTCGAGAGAAGCCTTTCCATGCAGAGAAAATCGGCCTTGTTGAAGGCCAAGACGAGGTCTAGGTTAATGGACCCGCCCGAAGAGCCCGACAGAAAATCGAGTCGGGTTCTCAAATCGAGTCAGCTCCTATCCGGGTTTCTAGGGAAGAAGAATGATGAAGAGGATGAGGATCCTTTTTTGGAAGAGGATCTTCCTGATGAGTTTAAGGAGACTCATTTCAGCTTGTGGATTCTTCTCGAGTGGTTGAGTTTGATTTTGATCATTGGGTTGTTGATAACCACCCTTTGTGTTCCCTTTCTTAGGAACAAGGATCTGTGGCAGCTTAGGTTGTGGAAATGGGAGGTTATGGTTTTGGTTTTGATCTGTGGCAGGCTGGTGTCTGATTGGGTTATTAGGATTGCTGTGTTCTGCATTGAGAGGAACTTCCTTTTGAGGAAGAGGGTCTTGTATTTTGTATATGGTGTGAAGAAGGCTGTTCAGAATTGTGTTTGGTTGGGGCTTGTGTTGATTGCTTGGCATTTGTTGTTTGACAAGAGGGTGCAGAGGGAGACCCGCAGCAATTTCCTCGAGTATGTGACTAAGGTGTTGGTGTGTTTCCTTGTGGGGACTTTGGTGTGGTTGTTGAAGACCCTTATGGTTAAGGTGTTGGCTTCCTCTTTTCATGTGAGTACCTACTTTGACAGGATTCAGGAATCGCTGTTTAACCAGTTTGTGATTGAGACGCTTTCGGGGCCGCCTTTGGTGGAGATTCGGAAGGCTGAGGAGGAGGAGGAGAGGCTTGCCGATGAGGTTCAGAAGCTTCAGAATGCTGGGGTTACCATACCCCCTGATCTTAGGGCATCTGCCTTTTCTAATATTAAGAGTGGGAGGTTGAGGAGTGGAATGCTTCCGAAAAGCCCCAGATTTAAGAGTGACAAGTTTTCTCGGCCTCTTTCCAAGAAGTCTGATGAGCCGAATATGATCACTATGGATAACCTGCATAAGCTGAATCCCAATAACATCTCTGCCTGGAATATGAAAAGGTTGATGAACATGGTCCGGAATGGGGCTCTTTCTACCCTGGATGAACAGATTCTTGATAACTCGATGGATGACGAGAATGCCACGCAAATTAGAAGTGAAAACGAGGCGAAGGCTGCAGCTAAGAAAATATTTCAAAATGTTGCTAGACGCGGGTGCAGGTATATATACCCGGATGACTTGATGCGCTTTATGCGAGAAGATGAAGCTGCAAAAACCATGAATCTCTTTGAAGGAGCGTCTGAAGCTGAGAGAATCAGCAAATCAGCCTTGAAGAACTGGGTGGTCAATGCCTTCAGGGAAAGGAGAGCACTTGCTTTGACATTGAATGACACCAAAACGGCAGTGAACAAACTTCATCGAATGCTCAATTTTATAGTTGCAATTGTTATACTGGTTATTTGGCTCTTGATATTGGAACTTGCCACCACCAAATTTCTTCTCTTTGTGAGCTCACAGGTTGTCGTGGTTGCATTTGTATTTGGAAACACCTGCAAGACCATATTTGAAGCAATTATTTTCTTGTTTGTCATGCACCCATTTGATGTGGGAGATAGATGTGAAATTGATGGGGTTCAGATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATATGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATATATAACTATTACCGGAGTCCTGACATGGGAGATGCTATCGAATTCTGTTTACATATATCTACCCCAGTTGAAAAGATTTCACTCATTAAACACAGAATACAAAGTTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTAATCGTATACAGGGATTATGACCAATTAAACATGGTGAGAATGGCTATCTGGCCAACTCATAGAATGAACTTCCAAGACATGGGAGAAAGGTTTGTGAGGAGATCCCTTTTGCTTGAAGAGATGATCAAGATTTTTAGGGAGCTTGACATTAATTACCGTCTATTGCCCCTGGACATCAACGTGAGAGCGACTCCTACCACCTCTGATCGTCTTCCACCTAGTTGGGCATCAGTTCCAACTCCAAGTTGA 2844 0.4743 MQTWSVHYTNSSYPFSFSSPCLLLLGFGIRKSFKSYGSYNKHSRFSGAGNSDSDHEQQLPILHDQETHCHPAMPAGDYVVKINEDGSEAPQGNRIWRESSYEFWNNDGATTTAGGSDQSFDFRQSEDPPSQLIGHFLHKQRASGEMQLDMDLEMEELQREGDDGKLTPVDESPVTHRVSRELKVSFEEPTCNVNFLEAQNDAVRRRHSKDSPSIAEFQRPPQPPQHDCRRSPSPSPAGDEEVVRCTSNASFERSLSMQRKSALLKAKTRSRLMDPPEEPDRKSSRVLKSSQLLSGFLGKKNDEEDEDPFLEEDLPDEFKETHFSLWILLEWLSLILIIGLLITTLCVPFLRNKDLWQLRLWKWEVMVLVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHLLFDKRVQRETRSNFLEYVTKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIRKAEEEEERLADEVQKLQNAGVTIPPDLRASAFSNIKSGRLRSGMLPKSPRFKSDKFSRPLSKKSDEPNMITMDNLHKLNPNNISAWNMKRLMNMVRNGALSTLDEQILDNSMDDENATQIRSENEAKAAAKKIFQNVARRGCRYIYPDDLMRFMREDEAAKTMNLFEGASEAERISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFIVAIVILVIWLLILELATTKFLLFVSSQVVVVAFVFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTIFLRYDNQKVIIPNNVLATKAIYNYYRSPDMGDAIEFCLHISTPVEKISLIKHRIQSYIDNKKEHWYPSPLIVYRDYDQLNMVRMAIWPTHRMNFQDMGERFVRRSLLLEEMIKIFRELDINYRLLPLDINVRATPTTSDRLPPSWASVPTPS* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0835 947 MobiDBLite consensus disorder prediction 107 127 - -
Gso20g0835 947 PIRSF Memb_At2g17000 63 947 IPR016688 -
Gso20g0835 947 Coils Coil 500 520 - -
Gso20g0835 947 SUPERFAMILY Sm-like ribonucleoproteins 760 819 IPR010920 -
Gso20g0835 947 MobiDBLite consensus disorder prediction 266 287 - -
Gso20g0835 947 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 28 164 IPR016688 -
Gso20g0835 947 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 174 942 IPR016688 -
Gso20g0835 947 MobiDBLite consensus disorder prediction 107 126 - -
Gso20g0835 947 Pfam Mechanosensitive ion channel 712 915 IPR006685 GO:0016020|GO:0055085
Gso20g0835 947 MobiDBLite consensus disorder prediction 157 177 - -
Gso20g0835 947 Gene3D - 770 819 IPR023408 -
Gso20g0835 947 MobiDBLite consensus disorder prediction 202 244 - -
Gso20g0835 947 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 28 164 - -
Gso20g0835 947 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 174 942 - -
Gso20g0835 947 MobiDBLite consensus disorder prediction 270 285 - -
Gso20g0835 947 MobiDBLite consensus disorder prediction 549 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0835 Gso-Chr20 37783432 37793591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0835 77 947 Mechanosensitive Ion Channel Family AT1G78610 57.253 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0835 K22048 - gmx:100789882 1786.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0835 20 37783432 37793591 Gso10g2501 10 52040332 52044618 GST