Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0834 ATGCTGACGGAGGGAAACAACAGCAGCTGCGGCAGCGGCAGCGGAGTGCAGCACCATACGACGTCGTCCTCGTCCTCGCCGGCGCAGAGCCGGCTACAGCGGCAGAAGCTGGAAGTATACAATGAGATTCTTCGCCGCTTGAAAGATTCCGGCAACGAAGAAGCCATGCAACCTGGCTTCCACGATCAGCTTTGGGCTCACTTTAATCGACTCCCTACGTGGTATGCGCTGGATGTGAATGTGGAAAGAGCCGCAGATGTTCTTATGCACAAGAGATTGCTGCATTTGGCGCATGATCCTGCTAATAGGCCTTCAATTGAAGTTCGATTAGTTCAGGTTCATCCCACATCCAATGGAAACTCAGCTGACACTTTTGAATCAGATGATCCTGGGATAGAATCTGGACAAAGTTCTTCAAAGTACTCAAGCAGACAGAGTATACATCCACCTCCTGCATTTGGTTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGCAAATAATTCTGAAGACATAGAAGAGGAACAATCTGCACATGCCAATGTTCAATATTCACGGCATATGCATGAAATCACCATCTCAACAGATGACAAGCCCAAGCTTCTCAGTCAGTTAACTGCTTTGCTTTCTGAGATTGGACTGAACATCCAAGAAGCACATGCCTTTTCTACAACTGATGGTTTCTCATTAGATGTGTTTGTTGTTGAAGGATGGCCCCATGAGGAAACCGAAAAGCTTAAAGCTGCTTTGGAAAGAGGAGTCTTGAAGAAGATTGAGAGGCAGGTGAAGTCTAGTCCACAATCCGTATCTTCTGTTGACAAGCCCGATCAAGCAAAGATGAAAAGCGAACTGGATTATTTGACAATACCAACTGATGGGACAGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCATCTGGGTCATATGGTGAACTATTTAAAGGTGTATATTGTAGCCAGGAAGTGGCCATCAAAGTTCTCAAGGCTGACCATGTAAACTCAGAATTGCAGAGAGAGTTCGCACAGGAAGTCTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAGCCCCCAGGCTTATGCATAGTAACAGAATTTATGTCTGGTGGAAGTGTGTACGACTACCTACATAAGCAGAAGGGCTTTTTTAAATTTCCTACCCTTCTCAAAGTAGCAATTGATGTTTCTAAAGGAATGAACTACTTGCACCAACATAATATAATCCATAGAGACTTGAAGGCTGCCAACCTTTTGATGGATGAAAATTGTACTGTAAAGGTCGCTGATTTTGGGGTTGCTAGAGTTAAAGCTCAATCTGGTGTCATGACTGCAGAAACTGGAACATATCGATGGATGGCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACCGGAAAGCTTCCATACGAATATTTAACCCCCCTACAGGCAGCTATAGGAGTGGTTCAAAAGGGTTTACGACCCACCATCCCCAAGAACACTCATCCGAAGTATGTTGAGCTTCTTGAGAGGTCTTGGCAGCAAGATCCAACATTGAGGCCCGATTTCTCCGAAATTATCGAGATCCTGCAGCAGTTAGCAAAGGAGATAATAGTTAGAATTAGAGGTCTCGAACAAGATTTAGACCGAGGAATAGGAGAAGCCCTTGGGAGGAGAGAGACCACTGATGATGATAATGATGCCCCGAGCGGCGAAGGCCTACCGCATATGCCCGTAGGTAGGGACAAGAGACCCATATTATTTAAGTTAATGTAA 1845 0.4434 MLTEGNNSSCGSGSGVQHHTTSSSSSPAQSRLQRQKLEVYNEILRRLKDSGNEEAMQPGFHDQLWAHFNRLPTWYALDVNVERAADVLMHKRLLHLAHDPANRPSIEVRLVQVHPTSNGNSADTFESDDPGIESGQSSSKYSSRQSIHPPPAFGSSPNLEALALEANNSEDIEEEQSAHANVQYSRHMHEITISTDDKPKLLSQLTALLSEIGLNIQEAHAFSTTDGFSLDVFVVEGWPHEETEKLKAALERGVLKKIERQVKSSPQSVSSVDKPDQAKMKSELDYLTIPTDGTDVWEIDPKHLKYGTQIASGSYGELFKGVYCSQEVAIKVLKADHVNSELQREFAQEVYIMRKVRHKNVVQFIGACTKPPGLCIVTEFMSGGSVYDYLHKQKGFFKFPTLLKVAIDVSKGMNYLHQHNIIHRDLKAANLLMDENCTVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKYVELLERSWQQDPTLRPDFSEIIEILQQLAKEIIVRIRGLEQDLDRGIGEALGRRETTDDDNDAPSGEGLPHMPVGRDKRPILFKLM* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0834 614 SUPERFAMILY ACT-like 186 252 IPR045865 -
Gso20g0834 614 Gene3D Phosphorylase Kinase; domain 1 294 382 - -
Gso20g0834 614 Pfam Protein tyrosine and serine/threonine kinase 304 553 IPR001245 GO:0004672|GO:0006468
Gso20g0834 614 ProSiteProfiles ACT domain profile. 190 271 IPR002912 -
Gso20g0834 614 CDD ACT_TyrKc 188 255 - -
Gso20g0834 614 MobiDBLite consensus disorder prediction 578 603 - -
Gso20g0834 614 MobiDBLite consensus disorder prediction 578 593 - -
Gso20g0834 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Gso20g0834 614 Gene3D Transferase(Phosphotransferase) domain 1 383 575 - -
Gso20g0834 614 Coils Coil 550 570 - -
Gso20g0834 614 PRINTS Tyrosine kinase catalytic domain signature 378 391 IPR001245 GO:0004672|GO:0006468
Gso20g0834 614 PRINTS Tyrosine kinase catalytic domain signature 415 433 IPR001245 GO:0004672|GO:0006468
Gso20g0834 614 PRINTS Tyrosine kinase catalytic domain signature 461 471 IPR001245 GO:0004672|GO:0006468
Gso20g0834 614 PRINTS Tyrosine kinase catalytic domain signature 480 502 IPR001245 GO:0004672|GO:0006468
Gso20g0834 614 PRINTS Tyrosine kinase catalytic domain signature 524 546 IPR001245 GO:0004672|GO:0006468
Gso20g0834 614 MobiDBLite consensus disorder prediction 1 33 - -
Gso20g0834 614 ProSiteProfiles Protein kinase domain profile. 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0834 614 SUPERFAMILY Protein kinase-like (PK-like) 284 553 IPR011009 -
Gso20g0834 614 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 20 564 - -
Gso20g0834 614 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 20 564 - -
Gso20g0834 614 CDD STKc_MAP3K-like 310 553 - -
Gso20g0834 614 Gene3D - 186 261 - -
Gso20g0834 614 MobiDBLite consensus disorder prediction 117 152 - -
Gso20g0834 614 MobiDBLite consensus disorder prediction 117 157 - -
Gso20g0834 614 SMART serkin_6 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0834 Gso-Chr20 37757458 37773743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0834 2 560 MAP Kinase Kinase Kinase AT4G35780 64.758 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso20g0834 PK_Tyr_Ser-Thr 1.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0834 - - gmx:100804170 1177.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0834 20 37757458 37773743 Gso10g2502 10 52048345 52057849 GST